MmuINT0151708 @ mm9
Intron Retention
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29855434-29857949:+
Coord C1 exon
chr2:29855434-29855582
Coord A exon
chr2:29855583-29857750
Coord C2 exon
chr2:29857751-29857949
Length
2168 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
3' ss Seq
ACCCTCTTGACTTCTGTCAGATA
3' ss Score
7.15
Exon sequences
Seq C1 exon
GATTGGTGGAAAGTGGAAGTGAATGACCGGCAGGGTTTCGTGCCAGCTGCATATGTGAAGAAGCTGGACCCCGCCCAGTCAGCCTCGAGGGAGAACCTCCTAGAAGAGCAGGGCAGCATTGCTCTGCGGCAGGGGCAAATTGACAACCA
Seq A exon
GTAAGGGCTCAGATACTCAGCACCGGCTAGACAGCACCTAGGGCTTAATGCAGTCCTCAAGCAGATCAGTCAGTGTCTTGGGGTCTCTGGAGCCCTACGTCTTCTTTTCTATTTCCCTTAAGTCTCCTAACCCACCAGCCTCCATTTTAGAGCTCGGATTCTTGACTAGTACCTTAATCTCACTTGGTTTTTTTTCTGTGTTTCTGAGCTGCTTTTTCTAAAGCACATTTTGCTACTTGGTACAGTGTTAGCCTTTGTCTTGTTGACAAAATTCTTTTTGGGTTGGATTTTCAGATATCTTACCCCTTGGCTCTGCCTCCCTTTGGACAGCTGCCTGGGAGCTGCTCTCTCTTCCTTTGCACTCAGAGAAAGGAATTTACTTTTTAAGCTGGTTTTCTTCATATCATATAGACAATTCCCATATTGCCCTATGTCTGTCCTATAGTGTGTACCTTACTCTGCTGATGAAATCAACAGCTTTGGGCATCTGGGGAATACAGGAAGTATATATCTAAGTCCAGTAGGGCTTAGAATAAGAGAGCTTTTCTGACATTAATGATCTTGAAATGACAAGAGCCATTTGTACACTTGTAGACTCTTTTACTTGAACTGCATAAACAAGGAGACGCTGGGGTTTATGTTATTATCCCAGACCTGGATCATAAATGTAAGAGCACAGAAGTTGATGGAGCTAGTGTTGCTGAGCTGGCAATTAGAGTCAGCACTGTCCTTTGGGTCTGTTTTGTCCCCTGGCCTGCTCTGTGCAGTAAGTGTGTGCAGTACAGGGAATGCAGCCTTACATGAAGCAGAGTTGTCAGGAACATGAAGGTAAACTAACCCTCTCATTTAATTTTCCTGCTGTTTCTCCAGTGATTTCGTTCATGGCCTGGGCTGCTTCTAAGAGCTTTTGAAGGATTCCTATGTTTTTCCCATTTCAAGCATCCGCCATCATGGCACCAGTTGGAGCTGCTGCTTTTTATTCCCATAGATTAATCCCACTAATGTGTGCATGCTTTTGCTGTACCCCCTCTGTGCAGGACACGCATAACTAAGGAGGCCGGCAGTGTATCTCTGCGTATGAAACAGGTGGAAGAACTGTGAGTAGGCTGAGAACCTGGCTGAGCTCCCATGTCACTGCTACACCTGTCCATTCCTCTCTGCCGCTCTTCTCCAAAGCACTTTCCATTGAGAAGGAGGTGGTGCAGGGGACCTGCCACATCTTCACAGCTTTGCTGCCTGTGGGAGAATCTCAGAACTGCTCTCCCTGGTTGCTTCTGCCTGCTTGTGTTTGGAATGGTGTTGGCTCACTCTAGCTTTGTGGTAGAGCAGGAGCAGGTCCTCCATAAACCTGCAGCCAGTTCTGTTGTATTCCTCAATAGGGAGGCAACAACGTGTGACTTAGAGGTTAGGGGCTCTGATTTCTGGTGACTGTTACTTTTTGTTTGGGAAGCTTAGATTTAGTGATGTTTTTCAGATTTTTCTTTAACTTTGAATTTCATTTCTTACTCAGATTTGTCATTTTTGTATCTTGAAAGATAGTGGTAGTTCAGCTTATAAGTCTTAGTTCTCATGGGTGAGAAAGTTCTTTTGATTCTTCTCAGGTCTTGTAGGTGATGGAGTTGTGTACAAACTGCACACTACCTTATATTCTTTCACTGCTCAAAAATAGAGATCACCATGGAGATGCCCTACTGGTCAGAGATGGAACATCCTGTATTGGACTATATTAAAGCTCATATCTTCCCCCTCTTAGGGGCTGCTCAGAGAATTTTAAAACCAAGAAAATTCCTTTTATACATTATGTAGTTTTGTCTTTATGTAGCTTCATTTCATCTCTCCAAACAGTCGCATGAACCTTCTGTTTCTGTGCTAAGTACTTAGTTTTAGGCTTATGTGATCATAATAGTTGTAAAATGCACCTGGGGTAAGTGTGCCTGGGCTGTGGTATCCCACGCAGTTACGACCAGTGTGTGCTTATCCCTAAGGCTGTAGTTTGAGTGCCTAGAATCCTCATCTTTGTGTGCTCTGATCCTTCGTTGCTAGGCATTATCATTACAATCTCATGCCTTGGATCACATCTCAGATACCTAGTGGTTGTCCTGTGTTAGCCTCTATGGTGAGCTAACTGCCTTCCTTGTCCATTGTGTTACCCTCTTGACTTCTGTCAG
Seq C2 exon
ATATCAGTCTCTGCTGGAACTGGGTGAGAAGAGAAAAGGCATGTTGGAGAAGAGTTGCAAGAAGTTCATGTTGTTCCGGGAAGCAAACGAGTTACAGCAGTGGATCACTGAGAAGGAGGCTGCTCTAACCAATGAGGAGGTTGGCGCTGACTTGGAGCAGGTTGAGGTGCTGCAGAAGAAGTTTGATGACTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-Spna2:NM_001076554:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(32.6=30.0)
A:
NA
C2:
PF0043516=Spectrin=PU(54.1=68.7)
Main Inclusion Isoform:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: