HsaINT0158415 @ hg19
Intron Retention
Gene
ENSG00000197694 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) [Source:HGNC Symbol;Acc:11273]
Coordinates
chr9:131353756-131356652:+
Coord C1 exon
chr9:131353756-131353904
Coord A exon
chr9:131353905-131356453
Coord C2 exon
chr9:131356454-131356652
Length
2549 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
3' ss Seq
ACCCTCTTGAATTCCATCAGATA
3' ss Score
6.67
Exon sequences
Seq C1 exon
GATTGGTGGAAAGTGGAAGTGAACGATCGTCAGGGTTTTGTGCCGGCTGCGTACGTGAAGAAATTGGACCCCGCCCAGTCAGCCTCCCGGGAGAATCTCCTGGAGGAGCAAGGCAGCATAGCACTGCGGCAGGAGCAGATTGACAATCA
Seq A exon
GTAAGGATGACACTGGGGGCCGCAAGGGCTAGGCGTCCCATAGGCATACTCTGTTCCACATGGGCCGAAGCTTAGGCGTGTCCTGAGGCTCCTGGAGCCCACCTGCACGCCTCCTGCTGTCTCCACCCCACTTTGAGCCCACAGACCTCCCTGTGTGGGTCTCAGACCCCTGACTGATGACTTATATTGCTTTGTTTTTTTTCCACCAGTGTTCATGAGTTTTTCCTAACCAGAATTTTTCTAATCATTGCCATTTGCCTTTTGGTTCGAGATGCTTTTTGAAATTGGATTTTCAGATACTCTACGCCCCTACAGCTCTGTCCACTTTGAAAAGCTGCTTTCAGAGCTTCTCTGTCTGCCATAGCTTTGAGTTCTGAGAATGGAATTTTGTAATGAAATGGCTCTGTCCTCTTTCCTCTAGCTGAGCCCCCATATTGCCCTGTGTCCCTCCTTTAGGGTATTTCTGACTCCACTAGTGGAATCAGCAGTTTTGGACACTTGGGAAATATCCAGGAAATACATTCCCACTAGAGTTTGGGTAGAATAGTGAAATTTTTGGGCTCCAGTGATCCTCAGTAAGATCAGAGTTATTTGTCCACTTTATAGATTCTGTTACTATAGAGATAAGAATGGGAGGTTTTGGTTTGTGTTCTTTTTTTTTTTTTTTGAGACAGATTCTCGCTCTGTCATCCAGACTGGAGTGCAGTGGTGTGATCTTGGCTTACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTGCTGGCACATGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACTGTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCTTGGTTTGTATTCTTACCAGTAGTCTGGGTCATAAATATAAGAGGAAAAAGATCAAATACGTGGCTAAATTGCCTGTTAGCACTCAGTAAAATTTCTTTCTAAGGGTAGTCCAGTCTGTTCCCTGACCTTGCTCTGTGAAGTTACCAGTGTTTTCAGCACAGGAAAATCTGCCTTAAGCATGGCAGACCCGCCAGGAAAATGAAGGTGAACTAACCCTCTAATTTTCCTGCTATTTCTTTACTGTCATGTCACTCATGACTTAGACTGCTCCTTAGACCTGTTGAATAACTCCATAGTTTCCCAACATTAAGCATCCACCATCATGGCACCAGTCGGAGCTGCTGCCTTTCATCCCTGTGGATTAACCCCACTAATTCGTGCATGCTTTTGCTGTGCCCCCTCTGTGCAGGACACGCATAACTAAGGAGGCCGGCAGTGTATCTCTGCGTATGAAGCAGGTGGAAGAACTGTGAGTAGGCTGAGAGTCTTGCAGAGCACCAATGTCCACTGCTACCCTATCCATTCTCCCTCTGCCGCTTCTCTTGAAGGCCTTTGTCCATCCAGAAAGATGAGGTGGTGGGAGGAACTGCCTGTCCGTGCAGCAGCTTTGGCTCACAAGGGAAGAGGTCGCGGTGCAGCTGTGTCGGTCGATGACTGCTTATCTCATTGGTTGCTTCCATGTGCAGCTGTGTGTTCAGAGTGGTGTTGGTTCTCCCTCCTGTTGGTTTTTGTGGTGGACCAGCCACTATCAGCAGCAAACCTGAAGGCCTGTTCTATAGTTTTCCTTAGTAGGAAGGAAATCATATGCTTCTCTTAAAGTGCTCTGATTCTTGGTAACTCATTGCTTTTTTATTTTACTTTGGGACACTTAGATTTGATGATGATTCTAGTTTTTTTTAATTTTTAGTTTTTTATTGTTTGTTGTTTTCGTGTTCAAAGATAATATTTCAGCCTTTTGTATTTTAGTTCCCGAGGGTTAGAATATTCTTTGATTCTTAAGAAATCTTTCAAGTAACAGAATGGCACAGATACTCAGTACTGTGCCTGATTTTCCTTCTGAACTTGCCAAAACTTTCTGAGAGCTGAATGTATCATTTTAGAAATGTCCTACTAATATGGAGATAAAACATCCTATATGAGGATATTTTAAAGCTCAGTGTACCCTCCCCCACCTCACCCCAGCCTGGGGGCTCTTCAGAGAATTATAAAAGACAGAAAAACCCTCTGTATACATTCTGCCCAGCAAGTTCATCTCGTCTCTCCACTGTAGTTGCATGAGCCCTGTGTTACTGTGCTAAGCGCTTGGTTTCAGTCCCTTGTGGTTGTGTTGTTCTAAGTGCAGAATCGGCCTGGGGATAAGTGTGCCTGGCTGTTCTAGCCACCTGGTTGTGAACAGTACAGTGTGCGCATATCTCTCAGGCTGTGGCGTGGGTACTTGGGATCCTCGTCTTCATCTGATAACTCTGTTACTAGGGCATCATCATTACAAACTCGTAGCCTGGAATCCACATCTTGGAGACACCTCGTGGTTTGCCTTTATGTTAGCATCTACAGCTAACTGCCTTCCTTGTCCCTCTTGTCACCCTCTTGAATTCCATCAG
Seq C2 exon
ATATCATTCTCTGCTGGAACTGGGTGAGAAGCGTAAAGGCATGTTGGAGAAGAGTTGCAAGAAGTTTATGTTGTTCCGTGAAGCGAATGAACTACAGCAATGGATCAATGAGAAGGAAGCCGCTCTGACAAGTGAGGAGGTCGGAGCAGACTTGGAGCAGGTTGAGGTGCTCCAGAAGAAGTTTGATGACTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197694-SPTAN1:NM_001195532:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(32.6=30.0)
A:
NA
C2:
PF0043516=Spectrin=PU(54.1=68.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)