DreINT0155173 @ danRer10
Intron Retention
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13081972-13085009:+
Coord C1 exon
chr21:13081972-13082031
Coord A exon
chr21:13082032-13084810
Coord C2 exon
chr21:13084811-13085009
Length
2779 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCTCTTTCCTTTTTTAACAGGTA
3' ss Score
11.75
Exon sequences
Seq C1 exon
GACTGCGGCCACCAAGGAGGTGTGCAGCGTGTCTATGCGCATGAAGCAGGTGGAGGAACT
Seq A exon
GTGAGTAGGCCCGACCTATGTCATTCATTTGATCCAAGAAGCCTCCATTGTCGCAAGCACTCAATCCTCTCATCCATCTATGGCTTTTCTATCACTTCATATCATTCTATCCTTCTTGTCTCCATCCATCAGTCTGCTCTCTCAGTTCACATTAACTCTTCTATTCCATCAAAGGATAGAAGCTCATCCTGCTCTTCTCAAGATGTGGTCATTCCCTGCTGCTGCTCTTCATAGAACTGCTGTCACGTTTTTAAATCTGCATTTTTATTTTGCCTGCTGATTCAGCCGATTGTTATGCCAGTAGTCGAACCCTTGTTTGTGTTCCCAACTCATGTTTGCTTTTGCAGAGGGATTTCCAGGTCATTTGTTAAAGGAACGCTCCACTTTTAATTTAATGGTCATTTTACAAGTCACCTAGAGTTGAGTTTTAATGGTTTTGACTCCATTTAACCTACCATCAGGTCTGGCAGTAGCAATTTTAGCTTAGCTTAGCATAAATCACTAAATCAGATTAGACCATTAGCATCTTGCTCTAACAATTTAAAAAAAGATTTTAAACAATTTTCCTATCTAAAGCTTAGCTTGTAGTTACATTGTTTACTAAGACTGATTGATAATGAAAAGTTGGTAGTTTTTTAGCTTGATGTGGCTAGGAACTATACTCTCGTTCCGGCATAATAAGGAACTTTGCTGCTGTACCATGGCTGCAGCAAGTGCAATGGAAATACGCAGCAGCACTTGAAAATAGGTCCCCAGCTAGTAGGGGTGTCAAATCGAAATCGATCGAAATTTATGGTCAATTTCGATTATCAAATTAAAAAATAGAATCGTCGATGCTGCCACGCCCCAATGTCACGTCAGCTTGGCTTGCCAAGCGGGAAAAAAACAGGCTTGTTGAAGTGCTTGTTAAACTGCAGAAGCAGGAGACCCGTCGACAGAACTTAAACCCTCTCCTCTTTCAATGAAGTCGCCGGTGTGTAAGCATTTTGGATTTCCAGTGAGTTATGTTGACAACGTTCGTGTTGTCGACAAAAAAAAAACACAGTTTTGCAAGCTCTGCTATGTACGTATTACGTACGGTTCGTCCGATAGACAACAGCGGCATCGCGATCCTCCGCCCGCCCCCGTTGCAAATCCGCTCGCGAAAAGTACACACTCGGGCCCTGTTTACACTGTCTTTGTTTTTAAATGGCATTTTAGAACGACAACGATTTGATATCCACAGTGGCGTGTGGCATTTCTGAGCAGCCCTCCTTCCTCTCTACCTCTGAAAATGCACATCACGTGAAAACAAAGACACAGACGCACACACACTGTATTGCGCTCGAGACAGCAGGTCAAGGCAGTCAGAGGACTGCTTCAATCTTTCACTCACTTGTACTTAGTCATTTTAGCGAACACCTCAGATACTGTTGGCTGGTTCCTGTTGGTTGTGCGTCTTTTTTACCGACGCCATTATAACGACACAGATCACTGCCTATTCACGAGTCCCGCAGAATAAGTGATTGAAAGGTGGTAATTATGTGTGTATCTTGCCTTTATTCATTTACTGTATGATTTGTTTATGGGTAAAACAAAGACCATGCAGGTCAGGTAGTTTAAATGGTAGGCTACAAATAATTAATTGGTCATTAATTAATTAATTATTCATAATCGAAAATCGAATCGAATCGTGCCTTTAGAATCGAAAATGTAATCGAATCGAGGATTTGGAGGATCGTGACACCCTTACCAGCTAGGTAAAAGCACTACATAATATCATTGCACCTGTTGCAGCCATGGTACAGCATTAAAGTTCCGTATCATGCCAGAATGAAAGTACAGTTCCTTTACATCAGTGGTTCATAACCGGTGGGGTGCGGACACTCTCGCGGGGGGGTAAATTAAGTGATGGTCAATTGTCATCTCTCTTGGTCGTCAGGTCATGGGATGTATGTTGCTCTGTATTCAAATGTTATAAATTCAAAAACACCACATTTTGAATTTTTAAATGCAGTATGTCAATTTAGTTTATTTGTGTGTGCTGTGCTCATTGACTAGAAAACTGCGCTCATTTGTTTGATTTCTCCTCGAGAAGCAGTGTAAGCCTCAAAAATTTAAGGTCCTTGCTGTTGCTGAGTCCGTAACTGTCAAATTCGTTTTTTCACATTAGTCATTTGGTGGCCCACAATTGTCAAAAACACCCCTCAAAATATTTTCTACGGATGCGAAAAAATGCTGAAAATCGAACCATCCAATTAAATTTTTTTGACAGATGGAAGTTGCAGAGGCTGCAAACATATAAACCGTGAGTTCATATTTAGTATGTATATATATATAAAACGAATAAACTAGTCAGAATATAGGATACCAATAACTCTTTGCTTTAGTTTTTGTAAAACACACGCAGGCCCCAACTGCAATAAACCAGCTTTGGGGGGACCCAGCTTGCAAAAGGTTGAGAACACCTGCTTTACATAATGACCTAAAATAAACAACGACTTTTTATTTTCCTTATTTCTTAGTACATAATGTAACTACAGAAGAGTCAAGCTTTAAATGGGACAATTATCGAAACTTATTTTGAATGAGATGCTAATGGTCTAATCCGTTTTAATGATTTATGCTAAGCTAAGCTAAAAGTGACCCACCAGATATTGAGATCAGCTGAATAGATTTAAAAATGGTTAAACTCAACTCTTTAACTCTAATGGGGTTGAAAAATGAGCCAAAAAAAGCATGGAGTGTTTCTTTAATATGTGAGTATTTCTCTATTCATCCCTCTTTCCTTTTTTAACAG
Seq C2 exon
GTATGGTACACTGCTAGAGTTGGGAGAGAAGAGGAAGGACATGCTGGAGAAGAGCTGCAAGAAGTTCATGCTTTTCCGTGAGGCGAACGAGCTGCAGCAGTGGATCAATGAGAAAGAGTCTGCGCTTACTAACGAGGAGGTGGGATCTGACCTGGAGCAGGTGGAAGTGCTGCAGAAGAAGTTTGATGACTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231:ENSDART00000102251:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043516=Spectrin=PU(51.7=68.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]