MmuINT0151751 @ mm9
Intron Retention
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29856620-29857949:+
Coord C1 exon
chr2:29856620-29856679
Coord A exon
chr2:29856680-29857750
Coord C2 exon
chr2:29857751-29857949
Length
1071 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
ACCCTCTTGACTTCTGTCAGATA
3' ss Score
7.15
Exon sequences
Seq C1 exon
GACACGCATAACTAAGGAGGCCGGCAGTGTATCTCTGCGTATGAAACAGGTGGAAGAACT
Seq A exon
GTGAGTAGGCTGAGAACCTGGCTGAGCTCCCATGTCACTGCTACACCTGTCCATTCCTCTCTGCCGCTCTTCTCCAAAGCACTTTCCATTGAGAAGGAGGTGGTGCAGGGGACCTGCCACATCTTCACAGCTTTGCTGCCTGTGGGAGAATCTCAGAACTGCTCTCCCTGGTTGCTTCTGCCTGCTTGTGTTTGGAATGGTGTTGGCTCACTCTAGCTTTGTGGTAGAGCAGGAGCAGGTCCTCCATAAACCTGCAGCCAGTTCTGTTGTATTCCTCAATAGGGAGGCAACAACGTGTGACTTAGAGGTTAGGGGCTCTGATTTCTGGTGACTGTTACTTTTTGTTTGGGAAGCTTAGATTTAGTGATGTTTTTCAGATTTTTCTTTAACTTTGAATTTCATTTCTTACTCAGATTTGTCATTTTTGTATCTTGAAAGATAGTGGTAGTTCAGCTTATAAGTCTTAGTTCTCATGGGTGAGAAAGTTCTTTTGATTCTTCTCAGGTCTTGTAGGTGATGGAGTTGTGTACAAACTGCACACTACCTTATATTCTTTCACTGCTCAAAAATAGAGATCACCATGGAGATGCCCTACTGGTCAGAGATGGAACATCCTGTATTGGACTATATTAAAGCTCATATCTTCCCCCTCTTAGGGGCTGCTCAGAGAATTTTAAAACCAAGAAAATTCCTTTTATACATTATGTAGTTTTGTCTTTATGTAGCTTCATTTCATCTCTCCAAACAGTCGCATGAACCTTCTGTTTCTGTGCTAAGTACTTAGTTTTAGGCTTATGTGATCATAATAGTTGTAAAATGCACCTGGGGTAAGTGTGCCTGGGCTGTGGTATCCCACGCAGTTACGACCAGTGTGTGCTTATCCCTAAGGCTGTAGTTTGAGTGCCTAGAATCCTCATCTTTGTGTGCTCTGATCCTTCGTTGCTAGGCATTATCATTACAATCTCATGCCTTGGATCACATCTCAGATACCTAGTGGTTGTCCTGTGTTAGCCTCTATGGTGAGCTAACTGCCTTCCTTGTCCATTGTGTTACCCTCTTGACTTCTGTCAG
Seq C2 exon
ATATCAGTCTCTGCTGGAACTGGGTGAGAAGAGAAAAGGCATGTTGGAGAAGAGTTGCAAGAAGTTCATGTTGTTCCGGGAAGCAAACGAGTTACAGCAGTGGATCACTGAGAAGGAGGCTGCTCTAACCAATGAGGAGGTTGGCGCTGACTTGGAGCAGGTTGAGGTGCTGCAGAAGAAGTTTGATGACTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-Spna2:NM_001177667:23
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043516=Spectrin=PU(54.1=68.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCATAACTAAGGAGGCCG
R:
CATCAAACTTCTTCTGCAGCACC
Band lengths:
246-1317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: