MmuINT1032104 @ mm10
Intron Retention
Gene
ENSMUSG00000057738 | Sptan1
Description
spectrin alpha, non-erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29999914-30002429:+
Coord C1 exon
chr2:29999914-30000062
Coord A exon
chr2:30000063-30002230
Coord C2 exon
chr2:30002231-30002429
Length
2168 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
3' ss Seq
ACCCTCTTGACTTCTGTCAGATA
3' ss Score
7.15
Exon sequences
Seq C1 exon
GATTGGTGGAAAGTGGAAGTGAATGACCGGCAGGGTTTCGTGCCAGCTGCATATGTGAAGAAGCTGGACCCCGCCCAGTCAGCCTCGAGGGAGAACCTCCTAGAAGAGCAGGGCAGCATTGCTCTGCGGCAGGGGCAAATTGACAACCA
Seq A exon
GTAAGGGCTCAGATACTCAGCACCGGCTAGACAGCACCTAGGGCTTAATGCAGTCCTCAAGCAGATCAGTCAGTGTCTTGGGGTCTCTGGAGCCCTACGTCTTCTTTTCTATTTCCCTTAAGTCTCCTAACCCACCAGCCTCCATTTTAGAGCTCGGATTCTTGACTAGTACCTTAATCTCACTTGGTTTTTTTTCTGTGTTTCTGAGCTGCTTTTTCTAAAGCACATTTTGCTACTTGGTACAGTGTTAGCCTTTGTCTTGTTGACAAAATTCTTTTTGGGTTGGATTTTCAGATATCTTACCCCTTGGCTCTGCCTCCCTTTGGACAGCTGCCTGGGAGCTGCTCTCTCTTCCTTTGCACTCAGAGAAAGGAATTTACTTTTTAAGCTGGTTTTCTTCATATCATATAGACAATTCCCATATTGCCCTATGTCTGTCCTATAGTGTGTACCTTACTCTGCTGATGAAATCAACAGCTTTGGGCATCTGGGGAATACAGGAAGTATATATCTAAGTCCAGTAGGGCTTAGAATAAGAGAGCTTTTCTGACATTAATGATCTTGAAATGACAAGAGCCATTTGTACACTTGTAGACTCTTTTACTTGAACTGCATAAACAAGGAGACGCTGGGGTTTATGTTATTATCCCAGACCTGGATCATAAATGTAAGAGCACAGAAGTTGATGGAGCTAGTGTTGCTGAGCTGGCAATTAGAGTCAGCACTGTCCTTTGGGTCTGTTTTGTCCCCTGGCCTGCTCTGTGCAGTAAGTGTGTGCAGTACAGGGAATGCAGCCTTACATGAAGCAGAGTTGTCAGGAACATGAAGGTAAACTAACCCTCTCATTTAATTTTCCTGCTGTTTCTCCAGTGATTTCGTTCATGGCCTGGGCTGCTTCTAAGAGCTTTTGAAGGATTCCTATGTTTTTCCCATTTCAAGCATCCGCCATCATGGCACCAGTTGGAGCTGCTGCTTTTTATTCCCATAGATTAATCCCACTAATGTGTGCATGCTTTTGCTGTACCCCCTCTGTGCAGGACACGCATAACTAAGGAGGCCGGCAGTGTATCTCTGCGTATGAAACAGGTGGAAGAACTGTGAGTAGGCTGAGAACCTGGCTGAGCTCCCATGTCACTGCTACACCTGTCCATTCCTCTCTGCCGCTCTTCTCCAAAGCACTTTCCATTGAGAAGGAGGTGGTGCAGGGGACCTGCCACATCTTCACAGCTTTGCTGCCTGTGGGAGAATCTCAGAACTGCTCTCCCTGGTTGCTTCTGCCTGCTTGTGTTTGGAATGGTGTTGGCTCACTCTAGCTTTGTGGTAGAGCAGGAGCAGGTCCTCCATAAACCTGCAGCCAGTTCTGTTGTATTCCTCAATAGGGAGGCAACAACGTGTGACTTAGAGGTTAGGGGCTCTGATTTCTGGTGACTGTTACTTTTTGTTTGGGAAGCTTAGATTTAGTGATGTTTTTCAGATTTTTCTTTAACTTTGAATTTCATTTCTTACTCAGATTTGTCATTTTTGTATCTTGAAAGATAGTGGTAGTTCAGCTTATAAGTCTTAGTTCTCATGGGTGAGAAAGTTCTTTTGATTCTTCTCAGGTCTTGTAGGTGATGGAGTTGTGTACAAACTGCACACTACCTTATATTCTTTCACTGCTCAAAAATAGAGATCACCATGGAGATGCCCTACTGGTCAGAGATGGAACATCCTGTATTGGACTATATTAAAGCTCATATCTTCCCCCTCTTAGGGGCTGCTCAGAGAATTTTAAAACCAAGAAAATTCCTTTTATACATTATGTAGTTTTGTCTTTATGTAGCTTCATTTCATCTCTCCAAACAGTCGCATGAACCTTCTGTTTCTGTGCTAAGTACTTAGTTTTAGGCTTATGTGATCATAATAGTTGTAAAATGCACCTGGGGTAAGTGTGCCTGGGCTGTGGTATCCCACGCAGTTACGACCAGTGTGTGCTTATCCCTAAGGCTGTAGTTTGAGTGCCTAGAATCCTCATCTTTGTGTGCTCTGATCCTTCGTTGCTAGGCATTATCATTACAATCTCATGCCTTGGATCACATCTCAGATACCTAGTGGTTGTCCTGTGTTAGCCTCTATGGTGAGCTAACTGCCTTCCTTGTCCATTGTGTTACCCTCTTGACTTCTGTCAG
Seq C2 exon
ATATCAGTCTCTGCTGGAACTGGGTGAGAAGAGAAAAGGCATGTTGGAGAAGAGTTGCAAGAAGTTCATGTTGTTCCGGGAAGCAAACGAGTTACAGCAGTGGATCACTGAGAAGGAGGCTGCTCTAACCAATGAGGAGGTTGGCGCTGACTTGGAGCAGGTTGAGGTGCTGCAGAAGAAGTTTGATGACTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738:ENSMUST00000113717:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(32.6=30.0)
A:
NA
C2:
PF0043516=Spectrin=PU(54.1=68.7)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types