MmuEX0041443 @ mm9
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26271154-26271947:-
Coord C1 exon
chr2:26271891-26271947
Coord A exon
chr2:26271637-26271748
Coord C2 exon
chr2:26271154-26271291
Length
112 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCTCTCCCTCTGCAGAAG
3' ss Score
10.28
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTGTTTGGGATGAAAAGAAAAACCAGTGGGTGAATTTGAATGAACCAGAGGAGGAG
Seq A exon
AAGAAGGCTCCACCCCCACCTCCAACATCGTTCCCCAGGGTTCCCCAGGTGGCTCCCACTGGGCCTGCAGGACCACCCACGGCCTCCGTGAATGTGTTTTCTAGAAAAGCAG
Seq C2 exon
GTGGGTCCAGAGCTCGCTATGTGGATGTTCTAAACCCAAGTGGAACACAGCGGAGTGAACCAGCTCTTGCTCCTGCAGATTTCTTTGCTCCTCTCGCCCCACTGCCAATTCCTTCTAACTTATTTGTACCAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'30-37,'30-36,31-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.896 A=0.979 C2=0.868
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTTGGGATGAAAAGAAAAACCA
R:
AAGTTAGAAGGAATTGGCAGTGGG
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: