RnoEX0078965 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3862604-3863383:-
Coord C1 exon
chr3:3863327-3863383
Coord A exon
chr3:3863075-3863148
Coord C2 exon
chr3:3862604-3862741
Length
74 bp
Sequences
Splice sites
3' ss Seq
CCTCCAACATCGTTCCCCAGGGT
3' ss Score
7.26
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTGTTTGGGATGAAAAGAAAAACCAGTGGGTGAATCTGAATGAACCGGAGGAGGAG
Seq A exon
GGTTCCCCAGGCGGCTCCCACTGGGCCTGCAGGACCACCCATGGCCTCCGTGAATGTGTTTTCTAGAAAAGCAG
Seq C2 exon
GTGGGTCCAGAGCTCGCTATGTGGATGTTCTCAACCCAAGTGGAACACAGCGGAGTGAACCAGCTCTTGCTCCTGCGGATTTCTTTGCTCCTCTTGCCCCGCTGCCAATCCCTTCTAACTTATTTGTACCAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'35-39,'35-38,36-39
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.947 C2=0.823
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGAAAAGAAAAACCAGTGGG
R:
GTTAGAAGGGATTGGCAGCGG
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]