Special

ENSG00000148396 @ hg19

Biotype
protein_coding
Gene Symbol
SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:29006]
Coordinates
chr9:139334549-139372141:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
79.11
59.29
0
Alternative 3'ss
66
chr9:139341402-139341467
-
18.52
50
0
Exon Skipping
175
chr9:139360414-139360588
-
98.78
32.74
0
Exon Skipping
75
chr9:139340097-139340171
-
79.82
77.41
1
Exon Skipping
60
chr9:139339504-139339563
-
31.41
84.38
1
Exon Skipping
62
chr9:139358131-139358192
-
97.63
41.09
0
Exon Skipping
139
chr9:139357915-139358053
-
96.79
54.12
0
Exon Skipping
246
chr9:139357339-139357584
-
97.19
42.77
0
Exon Skipping
219
chr9:139348561-139348779
-
96.88
43.89
0
Exon Skipping
83
chr9:139347880-139347962
-
97.84
40.86
0
Exon Skipping
153
chr9:139345708-139345860
-
97.96
45.83
0
Intron Retention
77
chr9:139358054-139358130
-
9.41
60.05
0
Intron Retention
277
chr9:139341402-139341678
-
13.56
20.83
0
Intron Retention
533
chr9:139339564-139340096
-
9.02
29.99
0
Intron Retention
1151
chr9:139338353-139339503
-
11.85
44.19
0
Intron Retention
1999
chr9:139336276-139338274
-
8.61
73.82
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000026924 Sec16a 1-to-1
Mouse mm9 ENSMUSG00000026924 Sec16a 1-to-1
Rat rn6 ENSRNOG00000019122 Sec16a 1-to-1
Cow bosTau6 ENSBTAG00000023933 SEC16A 1-to-1
Chicken galGal4 ENSGALG00000002364 SEC16A 1-to-1
Chicken galGal3 ENSGALG00000002364 SEC16A 1-to-1
Zebrafish danRer10 ENSDARG00000099554 sec16b 2-to-1
Fruitfly dm6 FBgn0052654 Sec16 2-to-1