Special

ENSG00000148396 @ hg38

Biotype
protein_coding
Gene Symbol
SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136440096-136483759:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
78.77
98.08
0
Alternative 3'ss
66
chr9:136446950-136447015
-
18.8
100
0
Alternative 3'ss
0
NA
-
96.18
64
0
Alternative 3'ss
415
chr9:136441824-136442238
-
3.82
64
0
Alternative 5'ss
0
NA
-
17.75
26.72
0
Alternative 5'ss
189
chr9:136483510-136483698
-
81.34
27.74
0
Exon Skipping
175
chr9:136465962-136466136
-
98.49
32.74
0
Exon Skipping
122
chr9:136478709-136478830
-
18.93
54.31
0
Exon Skipping
75
chr9:136445645-136445719
-
78.89
78.26
1
Exon Skipping
60
chr9:136445052-136445111
-
29.73
87.1
1
Exon Skipping
62
chr9:136463679-136463740
-
96.93
36.38
0
Exon Skipping
16
chr9:136463586-136463601
-
68.84
9.89
0
Exon Skipping
246
chr9:136462887-136463132
-
96.45
41.73
0
Exon Skipping
219
chr9:136454109-136454327
-
95.35
98.18
0
Exon Skipping
83
chr9:136453428-136453510
-
97.15
39.58
0
Exon Skipping
153
chr9:136451256-136451408
-
97.55
47.57
0
Exon Skipping
264
chr9:136450818-136451081
-
1.56
96.88
0
Exon Skipping
114
chr9:136456053-136456166
-
99.2
88.52
0
Exon Skipping
193
chr9:136455601-136455793
-
98.95
96.43
0
Intron Retention
77
chr9:136463602-136463678
-
9.26
58.58
0
Intron Retention
2954
chr9:136443901-136446854
-
29.99
82.2
0
Intron Retention
1999
chr9:136441824-136443822
-
7.67
72.76
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000026924 Sec16a 1-to-1
Mouse mm9 ENSMUSG00000026924 Sec16a 1-to-1
Rat rn6 ENSRNOG00000019122 Sec16a 1-to-1
Cow bosTau6 ENSBTAG00000023933 SEC16A 1-to-1
Chicken galGal4 ENSGALG00000002364 SEC16A 1-to-1
Chicken galGal3 ENSGALG00000002364 SEC16A 1-to-1
Fruitfly dm6 FBgn0052654 Sec16 2-to-1