HsaEX0056827 @ hg38
Exon Skipping
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136474049-136483759:-
Coord C1 exon
chr9:136483510-136483759
Coord A exon
chr9:136478709-136478830
Coord C2 exon
chr9:136474049-136477684
Length
122 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTTTTTAAAATAGAGA
3' ss Score
5.15
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCGAGGAGCGCGCCCGCGTCAGGGCCCCGCGCTTCTCAGCTGGGCGGAGTAGCCGTTCTCGGTGCGTGAGCCTGCTGGCATCGGTCCTGCAGACTGATTTCCCGCTTGTGGCCTTGATTGAAGAATCCCATCTCTTCTCACATCTTAAAACGAAAAAAGACTGGGAGAAAGAGCCAGCGTAAACAGGGCGACGTACTGGGACGGCCCCGGCGCGCCTGGCCGGGCAGGTGGCGAGGGGCGGGGCCAAGCG
Seq A exon
AGACCGTCTTGCTCTGTTGCCCAGGCTGGACCGCGGTGGTATAATCATAGCTCACTGCAGCCTCGAACTCATGGACACAAGTGATCTTCCTTCCTTAACCCCCTGAGTCCCTGGGACTACAG
Seq C2 exon
CTCCAATTAAGGAACAGCTATATCCTGCTTCCTTCTGTAAGCAGCATCGACTTGTGCAAGGGTTCAGTCATGCAGCCACCGCCCCAGACGGTCCCGTCTGGCATGGCTGGGCCACCTCCAGCCGGGAATCCTCGGAGCGTGTTCTGGGCTAGCAGCCCTTACAGGAGACGGGCTAATAATAATGCAGCAGTGGCTCCGACAACTTGCCCGTTGCAGCCGGTCACGGATCCATTTGCTTTTAGTAGACAGGCGCTCCAAAGTACACCACTGGGCAGTTCGTCCAAAAGCAGTCCACCTGTCTTGCAAGGCCCAGCCCCCGCAGGGTTTTCTCAGCACCCCGGTTTGCTTGTTCCTCACACACATGCCAGAGATAGCTCTCAGGGACCCTGTGAGCCCCTGCCTGGACCTCTGACACAGCCCAGAGCACATGCCAGTCCGTTTTCTGGTGCATTGACACCTTCAGCACCTCCTGGGCCTGAGATGAACAGGAGTGCAGAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.916
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAACAGGGCGACGTACTGG
R:
TTAGCCCGTCTCCTGTAAGGG
Band lengths:
248-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development