HsaINT0146705 @ hg38
Intron Retention
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136440101-136443900:-
Coord C1 exon
chr9:136443823-136443900
Coord A exon
chr9:136441824-136443822
Coord C2 exon
chr9:136440101-136441823
Length
1999 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGCTGTTGATTTCATTCCAGGCC
3' ss Score
7.14
Exon sequences
Seq C1 exon
GCTCCTGGCGACCTCCCTGCTGCAGGGGGCCCTCCCAGCGGGGCCATGCCCTTCTACAACCCTGCTCAGCTGGCACAG
Seq A exon
GTGAGTGACTCCTACCTTTCCCTACGAGACCCTAACACGCCCACTGACGACCTGACCCTGCTGCTCAGTGATGGCAGCTTTCTGCCCTAGATCCTCTTTTTCTTTCTTTTTAAAAAATATATTTATTTATTTATTGAGACAGGGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCTGATCTCAGCTCACTGCAGCCATAACTTCCTGGGCTGAAGCAATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGGTCAGCACACCTGGCAAATTTTTTATGTTTTGTAGAGACGGTCTCACCTTGTTGCCTAGGCTGGTCTTGAACTACTAGGCTCAAGCGATCTTCCCACCTCGGCTTCCCAAGGCACTGGGATTACAGGCTTGAGCCACCGTGCCCAGCTTCTCTTTTCTGAATGAAAGTTGCACACCTACTGGGTGGCAGTCCACAGGGCACTGTGAGGAGCCAGGCTGGGCCCTCCCCGGCTGCCATTTCTCCCTTTGTGTGGACACCAGGCCCACCGTGCTCAGCTCTGCGTGGACACCAGGCCCGCCGTGCTCCCGTGTGGAGCTCTGTCGACACGAGGCCCTCCGTGCTCCTGTATTCGCTTTGCCTTTTCCTAGGTTGTAGTTTGTAAAATGTGCTTGGCTTTCTACTTGTGTATCCCTCATTCAGCCCCCAGCTCTGCCACGTCTGCTATTCTGTTCTCCTGGAGCCCGTGGTCTCTGAGCCGAGCGTGATCTCTCCTCCCTTGGCCCGGGCACCCGGGTCTCCCCGGAGTGGGTCCCCCAGCTTTGGAATCCTATGTTGCTGCCTTTCTTAGTTACTCTGTTTGTCTTGGTGACACACATCCTCTGGTAGCTCTTGCTTTTTTTGTATGTTTTTTATTTCTTTTTCCTAATAGCTTCTTGACAGAAAGGTCCCAGGGTGACTTGGGAGATGCCTTTCACGTCTGGAGCTGCCTTTCTCCTCCGGCCTATCTGGCTGGCTGGTAGAATTCTTGGGCCAAAGTCACTTTCTTCAGAACTGCAAGTGGCCTTAGGTTTCCTGCTGCCTGTGGTTGCTGAGACCCCAGGGCCGTTCTGCCTGCAGCCCCTTTCAGGGTCCGTTTCCCTGGGACCTGGAGGGCTTCACCCTCAGCCCCCTTGGGCCTGACTGCATGCCCTTCAGCTGGGGAGTGTTCTAGAATGTTTCCTGTGGTTTCCCTCCCTCAGCCTCGTCTCTCCTCCCCTCTCCCTTGCCTGTGGAGTATAGACTGGCTGCCAGTGTAGGGGAGCTGAGCGGGGTCCAAGGTCTGGGGCCTCTTGGGATTCAGCCCCATTGTCACCCCAGCCTGCCCTCACAGCCTCACACACTCTTGACTGCAGGCTTCCTGGGCTGGGGCCCAGCACTCCTGCCCTGGTCCTCTACAAACGAGGCCGAGGCTCCCAGGACCACTGCCCCCAAGCTGGCCCCTGGCTGTCACCTGCTTTTCAGCATCCAGACTAGTCGATTTTGGTATTGTCCTGCTCCCTTTACCATGTGGTTAGTGCCTTTACAAAAATTCCTTGGCTTTCCCCTCCATGAGGCTTTGCGAGGGAGCAAGAGTGGATGCCTGCATTGGCCAGCTGTCTGCAACTGAGGTCCCCGCGTCCCATGCAGTAGGCCAGGCCTGGCCACCACTTGTCCCTGGACTCTGGACAGCCAGGCTGGCTCTGCAGAGCAGCTCCAGGTCTCATGGCCCTGATGAAACCACGGCACCTCCTGGCCACCCTCACAGTAAACATTGATGGTTAAGGATACAGTGCTTTCAAGGGAGCCCAGGACTTGGCACTGACTTGTCGGTTTCCAGAGGCTTTTGGAAACAAAAACGAAGCCTTCAGCTTGTCAGCGCCAATGGCCCGTGTGGTTCATTATGTGGACCAGCCCCTGCCACGCTGCAGCCGAGCACTGCTCACCCTGGGGGCAGGCATGCAGAGGTCATGCTGTTGATTTCATTCCAG
Seq C2 exon
GCCTGCGCCACCTCCGGGAGCTCAAGGCTAGGGAGGATTGGCCAGAGGAAGCACCTGGTGCTGAACTAGGCTTGCCCTGCTGTGAACTTGCACTTGGAGCCCTGACGCTGCTGTTCTCCCCGAAGAACCCGACCGACCTCCGCGATCTCCGTCCCGCCCCCAGGGAGACACAGCAGTGACTCAGAGCTGGTCGCACACTGTGCCTCCCTCCTCACCGCCCATCGTAATGAATTATTTTGAAAATTAATTCCACCATCCTTTCAGATTCTGGATGGAAAGACTGAATCTTTGACTCAGAATTGTTTGCCGAAAAGAATGATGTGACTTTCTTAGTCATTTAGGATGATTTAAGGATATAGTATTCCTGGTCATTTAAGAATGTTCATTCATTGAAGCCGGAGCTGTCTCTGCCACAGGAGAGCCACATGGTCGGTAGTAACCAGGGCCTCTCCAAGCCCAGCTGTGAGTCACTGCCCAGTGAGTCCCGCGCTTCCTTTAAGGTGCTGGGAGCAAAGAGAGGGTGACTGAGGCAGACCCCAACCCCTGCTCTGCACCATCTGGGCCCTCGCCGTGTTTGAACCTGGCTGAATGAGTGGAGGGCGCTGTGTTCTCAATCAGCGCCTCCGAGGAGCCGTGGGGTTCCTTCGGCATTAGTTCACGGTTTTTGAGAGAGGCCTTAGTTACTGCAGTGAATTTCTTTCCTGTTGCAAAGACGCTTCCAGCCTCACTTTACTTTCTGTGGCCTGATGAGGACCATGGGTGATTTTGTGTACCCAAAGCGCTGGGGACTGCCCACCGTGTGGCCCAGTCACTGGGAAGGAGCCCCAGAGAGCCGGCTGTCTGACATGATGGCTCAGGGTGGTCATCCAGGTTGAAAACTGACCGTGTGATGTTTGATTTGGGCTTCATTTCGTGTGTAGGAGCACGGTTAGACTCACTGTTAAGGAAGCTGGATGCACTTCTCTAAAAGGCTGCACTTTCCGTGAGCACTTTTCGTGGTACAATCCACATGACCCACTTTCTCCCCTGGGGGACGTTGGTTCAGAGGTTGGTAGCACTTGGGGAGAGTATCTTAACACAGTTTCTTGACAGCAGCTCTGGAACTTAGTATTTCTGCCCCGAGTTTTGCCACACTGAGACTTTGAGTAGCTCCTGGTGGACTCAACCCTGTTCAACTCAGAGACGGGCCTCCTCTCACTGATGCAAAGCTTTAAGGCTTCTCTGACTGTTCTGAAACTCTTCGTATTCTTGTCAAGTCTAAAGAGACTGAAGAAAAGATTTAAATACTAATAAAAATCAGTAGATAATTTCTGTAGGTTCTGCTGGAGGAATACAAACTGTTTGGTGTTTTAAATTTAAGTGTAGAAATTGTAGAATGTGGAATTAGCACAGATCCTTCCTGGCTTTCTGTTTCACTTGATCATTTAGCCCAGACCACCCAGGATGTTTTCCAAAATGTTCCACAGGCGTGTCCCGCTGGATCCATTTGTCCTTGTCACTTGGAGAAAGGCCAGTCCCTGTGACGGGGCAGCCCTCTCTGTCCCTCGGTCAGCTCGTGTGAATCCTGGGACCTCTTCCGGTCGGCTCTGCCCGCTGTTCTGGGGTCGACTGCCACGACTTTTGATTCAAGAAGCTTCCTCCAGGCGGGAGCGGCTATTTTTCCTAAATGAGAATTGTTACATTGCAAATTGTTGAATAAAATATTTTGCGCTCCTTCAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396:ENST00000371706:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=NA C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCCTTCTACAACCCTGC
R:
TCGGCAAACAATTCTGAGTCA
Band lengths:
344-2343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development