GgaINT0126254 @ galGal3
Intron Retention
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8561164-8562161:+
Coord C1 exon
chr17:8561164-8561238
Coord A exon
chr17:8561239-8561616
Coord C2 exon
chr17:8561617-8562161
Length
378 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTCACATCATCTTTTTTCAGTCT
3' ss Score
7.46
Exon sequences
Seq C1 exon
CCTGCCCCTGTGCCGCCTTCAGGGGAACCGTCAGCAGGAACAGTACAGTTCTACAACCCTTCTCAATTTGCACAA
Seq A exon
GTGAGTAAAAGCCTTCTTGTTACTTTAAACTGTTGAACAAGACTATAGACTTGCTAGTCCATGGAGCTCAAACAAATAAATGCTGCTTGAGCAAATGAATTGTGCTGAACCTTCTTTTTTTAAGTGACCTCAGTCTGCATTTACCTTCAATAAGCAGCTTGCTGTGGCCTTAAATATCAGTACAAATTCCATCTTCTCTTGGATAGCTTTTTTTACTGTTTAATCTGGACTGCTCCATGTAGAATGTGTGCATCGACCCGTCTAGCTCCCTTAAACCAACAATTCTGGGATCAAAACTTTACTGACAGCATCTGTATTTTGTCTCCAGTATGGCATATTTTACACAACACTGTTTTTATTCACATCATCTTTTTTCAG
Seq C2 exon
TCTCCTGCAGTCACTGGAAGTTCAAGGCCAGGAAGAATTGGGCAGAGAAAGTATCCGACACTGAAGTAGTATGTGATGGCTTTGTTTGGAGTTCTCATTCACGTTCTGGGTATATGAAGAACTGCTCAATCTTACAGCACGTGGTATCAGAGCTGCAGGTGACATGACAGTAATTGAATGATGGATGATTTCTTTCTTCATGGGTCTCCCTGCTTGCACCTCATCTACATAAATCATTACCAAACGTGGAATATATGTAACTCTTCCTTTTAAAGAACTGGCTAGGAATAGCTTTGCTGTGATAAAGAATAGACACGAGAGAGGAAATAGATGTTGTCTGTTACAAAAACTATCCATAAATTGCAGAGGCAATTTATTCCTTGAAATTATTTTAAACCCTCTAGTGGGACTTCTGGAGACATAGTTTCAGGGATTCTTTAATTTCTGAAGGATGCTCCCCCCCCCGCGGGGGGAAAACATGTCCACATTGTAACGTGACACTGTGGCCTTAAGAGGACCATGCACAATTGTAACGCTTATCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364:ENSGALT00000003726:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAGCAGGAACAGTACAG
R:
TCTTTATCACAGCAAAGCTATTCCT
Band lengths:
356-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]