BtaINT0130201 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103939070-103940189:-
Coord C1 exon
chr11:103940112-103940189
Coord A exon
chr11:103939328-103940111
Coord C2 exon
chr11:103939070-103939327
Length
784 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TCCTGTCCCTGTTGTTTCAGGCC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GCTCCCGGTGCTCTCGCCCCTGCTGGGGCCCCTTCTGGGGCTGCGGTGCCCTTCTACAACCCTGCTCAGTTTGCACAA
Seq A exon
GTAAGTGCCCTCGCTGTCTCCCCGGCTCTGCCGCTGCTCTGGGGGTGGGCGTGGGGGGCCCTGGGGGAGGGGGCTGGGCGCCCCATCCGTTTCCTGCTGATGCTGCCCTGGGGTGGGGCTGACCTCCTCCTGTGCTGACTTTGGCCCCTCTTCACCTGGTGGCTGGTGACCTTCAGGCTGGAAATGCTTACTTTCATTTGTCTCCCTCCCAGGCTCTGGCCTGGAGAGAGTGGACGGGAGGTGGGGGCAGCCTTGGGATGCAGTAGAGGAGGGGGTCTGCGGGGAGGTCTTGGCTTTAGGAATTCAAAACCTCCCCTGACCGTGGGCCGTCCCAAGGCAGACCCTGCCCTTGCCACCTGGGGTCCCCAGCCTCGGGCTCCCTCCGGGGTGGGCCCCCACGACTGCGCCCTCCCTGTTCCCAGCCGCCATCTGCGTCTCCACTCCACAGCTGAGGGGATTCTTCTCTACTGGATCTTCACCTTGCTGATGCCTTCACAAAACTTCTTGACTCTGACTTCGTGTAGGGCTTTCCTGGGACCCAGAGTAAACGCCTGTGCTCCAGGCCCGCCTCCCCGGGTGCTCCCTGCCTCTCCCTGTCTCTGGCCAGGGCTGCTCAGACACCCGGCTGTGGGCACGGCCTCACCCCACCACCCTGCCTTAGGGACCCGGGCTGCGCATGAGACGACAGCACACACCTGTTTGTTGAGACCCGTCATCTGCTCTGCTTGGTCCGCGGCCCCCTGGGGCCAGCGTGTGGACCTCAGTCCTGTCCCTGTTGTTTCAG
Seq C2 exon
GCCCCTGCTGCCTCAGGAAGCTCAAGGACGGGGAGGATTGGCCAGAGGAAGTACCCGGCGTTAAGCTAGAAGGGCCGCGTCCTGGAGCAGCACCGGGACGGGAGATGGCTGTTCCGCCCAGAGGTCAGGCCAAAGGCCTGCGACTCCAGTCTGTCCCCACGTGGGCGTGAACACAGCGACTCAGAACTGACGTGTGGAGCGTTCCAGCATCAATTCCACGCCTTCACGGTGCTGGATGAAGAGTGGCTCTCTGACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933:ENSBTAT00000042743:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGGGCCCCTTCTG
R:
GAGAGCCACTCTTCATCCAGC
Band lengths:
310-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development