HsaEX1036339 @ hg38
Exon Skipping
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136448084-136451408:-
Coord C1 exon
chr9:136451256-136451408
Coord A exon
chr9:136450818-136451081
Coord C2 exon
chr9:136448084-136448161
Length
264 bp
Sequences
Splice sites
3' ss Seq
CTGTGTATTTGTGCCTTCAGATA
3' ss Score
10.04
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ACCCCCTCGAGGACGGTGCCAGACTCGGAGGCCCCCCCAGGGTGGGATCGTGCCGACTCGGGTCCCACGCAGCCACCTCTGTCTCTCTCACCCGCTCCCGAAACAAAGAGACCCGGACAGGCAGCCAAGAAAGAAACGAAGGAACCTAAGAAG
Seq A exon
ATAATAGGATAATAGCCCACCCAGGTCAGCATGGGGACACAGCCCGGCCCCCAGAGGTCGCCTCTGGCCACTACCTGTCAGACCCACCCGCAAGGGACCAGACGGCAGCCGCTGCTTTGTCACTGTGGTGTGTGCCTGCTGCCGGCTCACAGATCCTTTCTCCCAGCCGTGGACTTTGGGACTGCTTTCAGTGTGGGGCTGGGATCCGTCAGGCCCCAGGAGCCTCCTTGCCTATCTATTGGCGAATGCGCTTGTTTTTCTTAG
Seq C2 exon
GGTGAATCCTGGTTCTTTCGTTGGCTACCTGGAAAGAAAAAGACAGAAGCTTATTTGCCAGATGACAAGAACAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396_MULTIEX4-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.639
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000313050fB25346
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGGACGGTGCCAGA
R:
CGATTTGTTCTTGTCATCTGGCA
Band lengths:
226-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains