HsaEX0056835 @ hg38
Exon Skipping
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136448084-136453510:-
Coord C1 exon
chr9:136453428-136453510
Coord A exon
chr9:136451256-136451408
Coord C2 exon
chr9:136448084-136448161
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCTGCATTTCCTTGCGACAGACC
3' ss Score
6.7
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
GGATAGTGCCGCAGGAGGCGCCTGTTGGAAACTCACTTTCCGAGCTAAGCGAAGAAAATTTTGATGGAAAATTTGCTAATCTG
Seq A exon
ACCCCCTCGAGGACGGTGCCAGACTCGGAGGCCCCCCCAGGGTGGGATCGTGCCGACTCGGGTCCCACGCAGCCACCTCTGTCTCTCTCACCCGCTCCCGAAACAAAGAGACCCGGACAGGCAGCCAAGAAAGAAACGAAGGAACCTAAGAAG
Seq C2 exon
GGTGAATCCTGGTTCTTTCGTTGGCTACCTGGAAAGAAAAAGACAGAAGCTTATTTGCCAGATGACAAGAACAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396_MULTIEX4-6/7=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=1.000 C2=0.639
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000313050fB25345
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGCCTGTTGGAAACTC
R:
CGATTTGTTCTTGTCATCTGGCA
Band lengths:
147-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development