BtaEX6047218 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103943496-103946291:-
Coord C1 exon
chr11:103946209-103946291
Coord A exon
chr11:103945407-103945538
Coord C2 exon
chr11:103943496-103943576
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCTCGCGTGTGTCCCCCCAGGGC
3' ss Score
10.49
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGGTGGTGCCGCAGGAGACACCCGGCAGAAGCTCGCGCTCGGAGCCGGGAGAGGAGGAGTTTGGTGGGAACTTCGCTGATACG
Seq A exon
GGCTCCTTCAGGACCTCACCAAGTCCCGACACGCCGCCTCAGGCCCTGCAGCTGCCTGCGCCGCTGACGCCCGCACCCGAAGCGCAGAGACCTGTCCAGGCCGCCAAGAAGGAGAGCAAGGAGCCGAAGAAG
Seq C2 exon
AGCAGCGAATCCTGGTTCTCTCGCTGGCTGCCTGTGAAGAAAAGGACAGAAGCTTACCTGCCAGACGACAAGAACAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.741
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGACACCCGGCAG
R:
CGATTTGTTCTTGTCGTCTGGC
Band lengths:
154-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]