GgaEX1051397 @ galGal4
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7866145-7868144:+
Coord C1 exon
chr17:7866145-7866233
Coord A exon
chr17:7867436-7867594
Coord C2 exon
chr17:7868067-7868144
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCTGTATATTTATAATATAGGGC
3' ss Score
6.01
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAATGCAGAGAATTGCCTCAGAGTCTCCTTCACGAAACTCTTTTCCTGAGCAGAGAGAGGAAGATTTCTACAGCAGAATGGCTAGAATG
Seq A exon
GGCTATGGACAGAGATCCCGGACAACTTCAGAGTCCTCTGCTCATTCTGTGGGACGAGAGAGATCTAACTCTGCAGCAAAACAGCCACCTCCTTCTCCACCTGTTCCAGTAGGGAAAGAGACTAAGAAAGAAGTGAAAAAAGAGCCAGCATCTAGAAAG
Seq C2 exon
ACTGGTGCAAACTGGTTTCGCTGGCTGATGGGGAAAGGAAAGAATGAAGCTCACCTTCCAGACGACAAGAACAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'27-34,'27-32,29-34
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCAGAGAATTGCCTCAGAGT
R:
TGTTCTTGTCGTCTGGAAGGTG
Band lengths:
162-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]