MmuEX6099743 @ mm9
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26272154-26276976:-
Coord C1 exon
chr2:26276894-26276976
Coord A exon
chr2:26275141-26275290
Coord C2 exon
chr2:26272154-26272231
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCCATCTTGCTTTGTGACAGGGC
3' ss Score
8.13
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AAATGGTGCCACGGGGCTCACCTGTCAGACACTCCCCTCCGGAGCTCAGTCAAGAGGAGTTTGGCGAGAGCTTCGCTGACCCG
Seq A exon
GGCTCTTCCAGAACAGCACAGGACTTGGAAACCTCCCCAGTGTGGGATCTTGGCAGCTCCAGTTTGACACGTGCACCATCTTTGACATCTGATTCTGAAGGGAAGAAACCTGCACAGGCTGTCAAAAAGGAGCCCAAGGAGCCCAAGAAG
Seq C2 exon
ACTGAGTCCTGGTTCTCTCGTTGGCTGCCTGGAAAAAAAAGGACAGAAGCTTATCTACCAGATGACAAGAACAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'27-32,'27-30,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.847
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCTGTCAGACACTCCC
R:
TGATTTGTTCTTGTCATCTGGTAGA
Band lengths:
146-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: