GgaEX1051397 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8555241-8557240:+
Coord C1 exon
chr17:8555241-8555329
Coord A exon
chr17:8556532-8556690
Coord C2 exon
chr17:8557163-8557240
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCTGTATATTTATAATATAGGGC
3' ss Score
6.01
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAATGCAGAGAATTGCCTCAGAGTCTCCTTCACGAAACTCTTTTCCTGAGCAGAGAGAGGAAGATTTCTACAGCAGAATGGCTAGAATG
Seq A exon
GGCTATGGACAGAGATCCCGGACAACTTCAGAGTCCTCTGCTCATTCTGTGGGACGAGAGAGATCTAACTCTGCAGCAAAACAGCCACCTCCTTCTCCACCTGTTCCAGTAGGGAAAGAGACTAAGAAAGAAGTGAAAAAAGAGCCAGCATCTAGAAAG
Seq C2 exon
ACTGGTGCAAACTGGTTTCGCTGGCTGATGGGGAAAGGAAAGAATGAAGCTCACCTTCCAGACGACAAGAACAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'23-29,'23-28,25-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCAGAGAATTGCCTCAGAGT
R:
TGTTCTTGTCGTCTGGAAGGTG
Band lengths:
162-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]