HsaEX6064035 @ hg38
Exon Skipping
Gene
ENSG00000148396 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr9:136453428-136457584:-
Coord C1 exon
chr9:136457444-136457584
Coord A exon
chr9:136456053-136456166
Coord C2 exon
chr9:136453428-136453510
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTGCCCGTGTCTAGATG
3' ss Score
8.44
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTGTTTAAGTTCATCTACTCCTGCCGCCTGGCGGAAATGGGGCTGGCCACGCAAGCCTTCCACTACTGTGAGGCCATCGCGAAGAGCATCCTGACGCAGCCGCACCTGTATTCCCCGGTGTTGATCAGCCAGCTTGTGCAG
Seq A exon
ATGGCTTCCCAGTTACGACTCTTCGATCCCCAGCTGAAAGAGAAGCCAGAAGAGGAGTCCTTGGCCGCACCCACGTGGCTGGTTCACCTGCAGCAGGTGGAGCGGCAGATTAAG
Seq C2 exon
GGATAGTGCCGCAGGAGGCGCCTGTTGGAAACTCACTTTCCGAGCTAAGCGAAGAAAATTTTGATGGAAAATTTGCTAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148396_MULTIEX4-2/7=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.996
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(17.5=100)
A:
PF129312=Sec16_C=PD(11.8=81.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAGTTCATCTACTCCTGCCGC
R:
ATTTTCCATCAAAATTTTCTTCGCT
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains