MmuEX6099742 @ mm9
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26278974-26280077:-
Coord C1 exon
chr2:26279937-26280077
Coord A exon
chr2:26279403-26279516
Coord C2 exon
chr2:26278974-26279157
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTCTGGGGTCTAGATG
3' ss Score
6.55
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGTTTAAATTCATCTACTTGTGCCGCCTGGCTGAAATGGGACTTGCCACACAGGCCTTCCACTACTGCGAAGTAATAGCCAAGAGTGTCCTGACACAGCCTGGTGCATACTCTCCAGTACTGATTAGCCAGTTGACTCAG
Seq A exon
ATGGCTTCCCAGTTACGCCTCTTCGATCCTCAACTGAAGGAGAAGCCAGAAGAGGAGTCCTTTGTGGAGCCTGCCTGGTTGGTGCAGCTGCAGCACGTGGAGAGGCAGATCCAG
Seq C2 exon
GAGGGCACTGTGCTGTGGAGCCAGGATGGAACTGAACCCCAGCAGTGTCGCATTACATCGGGCTCTGAGGTGGAGCAGTCAGATGGCCCTGGACTCAACCAGCAGGCAGGGCCACAGGCCGACAACCCTCTACTGATGCCAAGCACTGAGCCTTTGATGCATGGCGTGCAACTGCTGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'22-26,'22-25,23-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.058 C2=0.916
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(55.4=100)
A:
PF129312=Sec16_C=PD(41.0=89.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGGACTTGCCACACAGG
R:
TGCTTGGCATCAGTAGAGGGT
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: