GgaEX6015425 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8553177-8554414:+
Coord C1 exon
chr17:8553177-8553317
Coord A exon
chr17:8553427-8553540
Coord C2 exon
chr17:8554210-8554414
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCAGTGCTTCCTTTTTCTAGATG
3' ss Score
9.25
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTTTTCAAATTCATCTATGCTTGCCGACTAGCTGAAATGGGACTTGCTGCTCAGGCTTTCCATTACTGTGAAGTGATTTCCAGAACTGTCCTTAAAGATCCACAGTACTATTCACCTGTACTAATTGGCCAGCTAATCCAG
Seq A exon
ATGTCATCGCAGCTGCGCCTGTTTGATCCTCAGATAAAGGAGAAACCAGACCAGGAATCCTTCATTGAACCTTCATGGTTAGTAAGGCTTCGACATGTGGATGGACAGATCAAG
Seq C2 exon
GAGGGTGCAATTGCTTATAGCACAGACAGATCCACGCCACAGCAGTACCCATGTAGCACACCAAGCTCTGAATTAGACCATACCAGTCAATATGATGGAGCAGGAGTTGGCCACGACATGGTCCCAGGTGCTGAAAATGCATTGTTAGCATCCTTATTGCCCAATATGGCTCAACAGATGCAAAGCGTGCAGCTGATGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.783
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(17.0=100)
A:
PF129312=Sec16_C=FE(13.7=100)
C2:
PF129312=Sec16_C=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACTAGCTGAAATGGGAC
R:
TTTTCAGCACCTGGGACCATG
Band lengths:
256-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]