DmeEX6002030 @ dm6
Exon Skipping
Gene
FBgn0052654 | Sec16
Description
The gene Secretory 16 is referred to in FlyBase by the symbol DmelSec16 (CG32654, FBgn0052654). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (6 unique). Gene sequence location is X:12596047..12609910. Its molecular function is described by: Ras GTPase binding. It is involved in the biological process described with 10 unique terms, many of which group under: endomembrane system organization; response to starvation; endoplasmic reticulum organization; stress granule assembly; response to nutrient levels. 8 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chrX:12604320-12605388:+
Coord C1 exon
chrX:12604320-12604584
Coord A exon
chrX:12604648-12604797
Coord C2 exon
chrX:12604861-12605388
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATGTGTTTTAACAGGTT
3' ss Score
10.19
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GCTTATTCTACTTGGCTCCTCGCACTACAAGCACTTCAACGAATTTGCCAGCAACGAGGCGATCATCATGACCGAGATCTATGAGTATGCTCGATCGCTGTTCGATCCGAAGTTTAGCATTGCCCACTTCCAACACTACAAGTTCCTGCTAGCCACAAGGATCCTAGATTATGGTCAGCATTTCCGCTGCACCAATTATTTGGAACAAATCGCCAGGCACATCGAACTGAAGCCGGAAAGCTACGACAGTAATTTCATTCAGCGG
Seq A exon
GTTTGCGGTTTGGCCGAACGCCTGCGCTACCATGATCCCATTCTCATTAATCGTGTCTCATTTGCGAGTCCTCCGAATGCCACTAGCAAGGATAGTGCTGCTGCTGAAGAGAAGGCCTGGTTGCGTCAGCTTAGATCTCTGGCCTATGTG
Seq C2 exon
CAGCCCCAACAAGAGCAGCTGCAACAACTGCAGCAGAATCAGCAAGTCCAGCAGGAGCAAAACGACATCGATCAGCAGTTTGCAGAGGTGAACAAGCAATTCAGGGAGCTAAACATGCAATACGAGAGCAACAGCAACATGGAGAATACGCTGCAGCCGCAGTTGCCACCGGTGGATCAACAGCCGCCGCAACAGCAGCAACAAGTTTTATCGGAATCGTACCAACAGCCAACACAACAATATTATGAGCCACCACCTCAAGCGCCAACCGAATCCGATCCCTATGGACAGGGCCAACCGTCCTATTATGATCCCAATGCGGGGCAGCTTCATTACGATCCAAATGCTGCACAGCATCAATACGACCAGCAGCAACCTCAACCACAGCCGACTCCCAGCTATGGCCAAATAGAGCCAGGAACTGAGGCCTACCAACCTGGACAAGCAACAGCAGATCCAGCTGCGGTTCCCTCTGGCTACGGATACGATTACTGGTCGGGCACACAGCAGCCACCTTATGGTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0052654-'4-18,'4-8,10-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.193 C2=0.959
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(33.8=100)
A:
PF129312=Sec16_C=PD(7.7=40.0)
C2:
NO
Main Inclusion Isoform:
FBpp0309104
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0112356, FBpp0112357, FBpp0301987, FBpp0309103, FBpp0309105
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGTTTTTACGGATCGCA
R:
TTGTAGTGTGTGTGTGTGCGT
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)