Special

ENSG00000120341 @ hg38

Biotype
protein_coding
Gene Symbol
SEC16B
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr1:177923956-177984303:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
57.37
60
0
Alternative 3'ss
3
chr1:177960940-177960942
-
42.63
60
0
Exon Skipping
62
chr1:177960342-177960403
-
91.5
35.8
0
Exon Skipping
82
chr1:177951914-177951995
-
92.51
23.08
0
Exon Skipping
106
chr1:177944561-177944666
-
90.08
74.01
0
Exon Skipping
109
chr1:177932698-177932806
-
91.34
43.59
0
Exon Skipping
76
chr1:177939702-177939777
-
98.54
34.71
0
Intron Retention
2188
chr1:177937514-177939701
-
15.92
40.42
0
Intron Retention
1677
chr1:177966006-177967682
-
10.68
40.13
0
Intron Retention
407
chr1:177932807-177933213
-
6.35
57.57
0
Intron Retention
1846
chr1:177930644-177932489
-
11.3
39.08
0
Intron Retention
725
chr1:177965168-177965892
-
20.44
69.38
0
Intron Retention
767
chr1:177964280-177965046
-
11.12
53.75
0
Intron Retention
650
chr1:177960940-177961589
-
22.72
46.66
0
Intron Retention
387
chr1:177960404-177960790
-
23.89
49.68
0
Intron Retention
1366
chr1:177958976-177960341
-
14.02
38.56
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000026589 Sec16b 1-to-1
Mouse mm9 ENSMUSG00000026589 Sec16b 1-to-1
Rat rn6 ENSRNOG00000005229 Sec16b 1-to-1
Cow bosTau6 ENSBTAG00000000854 SEC16B 1-to-1
Chicken galGal4 ENSGALG00000004424 SEC16B 1-to-1
Chicken galGal3 ENSGALG00000004424 SEC16B 1-to-1
Zebrafish danRer10 ENSDARG00000099554 sec16b 1-to-1
Fruitfly dm6 FBgn0052654 Sec16 2-to-1