HsaEX0056849 @ hg38
Exon Skipping
Gene
ENSG00000120341 | SEC16B
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr1:177932490-177933312:-
Coord C1 exon
chr1:177933214-177933312
Coord A exon
chr1:177932698-177932806
Coord C2 exon
chr1:177932490-177932569
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTCCACAAAGCAGGAG
3' ss Score
3.66
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
AGCTCAGGGTTTGGCTGGTTCAGCTGGTTTCGATCGAAGCCCACCAAGAACGCATCCCCCGCTGGAGACGAGGACTCCTCAGACAGCCCTGACTCTGAG
Seq A exon
GAGACCCCCAGAGCATCTTCTCCCCACCAGGCTGGCCTGGGCCTCTCACTGACACCTTCCCCTGAGTCCCCACCTCTGCCGGATGTTAGTGCCTTCTCCAGGGGCAGAG
Seq C2 exon
GTGGGGGTGAAGGCCGAGGATCCGCATCCAGCGGGGGAGCAGCTGCGGGCGCTGGGGTTGGAGGCTTGTCTGGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341-'27-32,'27-31,28-32=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=1.000 C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGGTTTGGCTGGTTC
R:
CTCTGGTCCAGACAAGCCTCC
Band lengths:
178-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development