BtaEX6069969 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60750284-60751114:-
Coord C1 exon
chr16:60751016-60751114
Coord A exon
chr16:60750497-60750605
Coord C2 exon
chr16:60750284-60750363
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTCTCCACTAAGCAGGAG
3' ss Score
4.69
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AGCTCAGGGTTTGGCTGGTTCAGCTGGTTCCGCTCAAAGCCCACCCACAACGCATCCCCCTCTGGAGAAGAAGATTCGTCTGACAGCCCGGACTCTGAG
Seq A exon
GAGATGCCCAGGGCAGCGTCTCTACCTCAGCCCAGCCCAAGCCTCTCACTGACACCTTCCCCAGATCCCCAGTCTCTGCTGGGTGCCAGTGCCTTCTCCAGGGACACAG
Seq C2 exon
GTGGAGATGAAGTCCGAGGGTCAGTGTCTGGTGTGGGGACAGCTGAGGGCCCGGGGAGTGGAGGCTTGTCGGGACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-'42-40,'42-39,43-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGGTTTGGCTGGTTC
R:
CTCAGGTCCCGACAAGCCTC
Band lengths:
178-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]