RnoEX0078979 @ rn6
Exon Skipping
Gene
ENSRNOG00000005229 | Sec16b
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:621658]
Coordinates
chr13:75212873-75214002:+
Coord C1 exon
chr13:75212873-75212971
Coord A exon
chr13:75213693-75213801
Coord C2 exon
chr13:75213923-75214002
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTTCTCACCAAGCAGGAG
3' ss Score
6.47
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGCTCTGGATTCGGCTGGTTCAGCTGGTTTCGATCAAAGCCTGCCAGCAGTGTGTCCACCTCTGGAGATGAAGACTCTGTGGACAGTTCTGACTCAGAG
Seq A exon
GAGTCTCCCAGAGCATCACCTCCTCACCATGCCAGCCTGGGCCTCTCACCAACACCTCCTCTCTCATCCCCATCTCTGCCAGGTGCCAGCACCTTCCCGAGAGGCACAG
Seq C2 exon
GTGGGAATAGTCTCCAGGGATCCTCAAACAGCAGTGGAATGGCTGAAGGCGTGGGGATTGGAGGGTTCTCGGGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005229-'31-38,'31-37,32-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGATTCGGCTGGTTC
R:
CTGTGGCCCCGAGAACCC
Band lengths:
178-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]