Special

ENSG00000120341 @ hg19

Biotype
protein_coding
Gene Symbol
SEC16B
Description
Protein transport protein Sec16B [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7]
Coordinates
chr1:177896701-178007142:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
57.53
56.36
0
Alternative 3'ss
3
chr1:177930075-177930077
-
42.47
56.36
0
Alternative 3'ss
0
NA
-
57.28
86.21
0
Alternative 3'ss
3
chr1:177901942-177901944
-
42.72
86.21
0
Exon Skipping
97
chr1:178003840-178003936
-
93.47
29.64
0
Exon Skipping
117
chr1:177942328-177942444
-
50.67
75.61
0
Exon Skipping
72
chr1:177940531-177940602
-
20.95
50.63
0
Exon Skipping
62
chr1:177929477-177929538
-
93.09
35
0
Exon Skipping
59
chr1:178002162-178002220
-
65.86
89.91
0
Exon Skipping
82
chr1:177921049-177921130
-
93.05
21.99
0
Exon Skipping
106
chr1:177913696-177913801
-
90.33
73.61
0
Exon Skipping
66
chr1:178001565-178001630
-
89.33
32.32
0
Exon Skipping
110
chr1:178000686-178000795
-
68.54
92.89
0
Exon Skipping
109
chr1:177901833-177901941
-
90.37
43.59
0
Exon Skipping
229
chr1:177991575-177991803
-
83.07
61.7
0
Exon Skipping
70
chr1:177954995-177955064
-
10.81
34.63
0
Exon Skipping
107
chr1:177954091-177954197
-
48.71
44.93
0
Intron Retention
2188
chr1:177906649-177908836
-
17.37
36.84
0
Intron Retention
1846
chr1:177899779-177901624
-
13.06
37.43
0
Intron Retention
725
chr1:177934303-177935027
-
18.4
45.63
0
Intron Retention
767
chr1:177933415-177934181
-
10.8
53.75
0
Intron Retention
650
chr1:177930075-177930724
-
16.44
27.67
0
Intron Retention
387
chr1:177929539-177929925
-
22.96
49.38
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000026589 Sec16b 1-to-1
Mouse mm9 ENSMUSG00000026589 Sec16b 1-to-1
Rat rn6 ENSRNOG00000005229 Sec16b 1-to-1
Cow bosTau6 ENSBTAG00000000854 SEC16B 1-to-1
Chicken galGal4 ENSGALG00000004424 SEC16B 1-to-1
Chicken galGal3 ENSGALG00000004424 SEC16B 1-to-1
Zebrafish danRer10 ENSDARG00000099554 sec16b 2-to-1
Fruitfly dm6 FBgn0052654 Sec16 2-to-1