HsaEX0056837 @ hg19
Exon Skipping
Gene
ENSG00000120341 | SEC16B
Description
Protein transport protein Sec16B [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7]
Coordinates
chr1:177940531-177953553:-
Coord C1 exon
chr1:177953341-177953553
Coord A exon
chr1:177942328-177942444
Coord C2 exon
chr1:177940531-177940602
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCTAAATTTTTACTTTCAGTAA
3' ss Score
7.49
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
ACCTTCTCAATATGGTGGTCAGATCATGTTTCCAGCCTCAGGAGCTGCCTATTAAGCCATTCCGATGGGAAACTGCTGCTGAAGCAGAAAGGTTCTGGGCAGCTGACGTGGCAACACAGTTTACAGTATCTGCCAGCTGTGAGTAACAGCAGGCTGTCATGATGGGATATAGCAGAAGCAGCAGCAGCAACTCCTGATTTAGGGGCAATCGAT
Seq A exon
TAAAGGATTAGGATGAAGCCTGAGGGATGTCTTAAATGCTGAGCTGCCCTTTGCAAGAGTAACCAGTCATTAAATCACAGTGCTCAAGGATTCCTGGCAAACCTGACCTAGATCTAG
Seq C2 exon
TTCCTCTTCCCAGAAGGATTAAAAACAACAGTGCAGCCATTAGAGAGCCAAACTTCACAGCCCAAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341-'14-17,'14-16,17-17
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTTTCCAGCCTCAGGAGC
R:
TTGGGCTGTGAAGTTTGGCTC
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)