Special

ENSMUSG00000026589 @ mm10

Biotype
protein_coding
Gene Symbol
Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157506728-157568425:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
77.81
46.43
0
Alternative 3'ss
7
chr1:157532046-157532052
+
21.92
46.43
0
Exon Skipping
95
chr1:157552019-157552113
+
6.02
22.24
0
Exon Skipping
168
chr1:157507386-157507553
+
74.32
84.08
0
Intron Retention
4310
chr1:157524854-157529163
+
18.46
52.17
0
Intron Retention
895
chr1:157565733-157566627
+
11
52.92
0
Intron Retention
660
chr1:157531393-157532052
+
10.11
28.57
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000120341 SEC16B 1-to-1
Human hg19 ENSG00000120341 SEC16B 1-to-1
Rat rn6 ENSRNOG00000005229 Sec16b 1-to-1
Cow bosTau6 ENSBTAG00000000854 SEC16B 1-to-1
Chicken galGal4 ENSGALG00000004424 SEC16B 1-to-1
Chicken galGal3 ENSGALG00000004424 SEC16B 1-to-1
Zebrafish danRer10 ENSDARG00000099554 sec16b 1-to-1
Fruitfly dm6 FBgn0052654 Sec16 2-to-1