MmuALTA0016020-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157531280-157532173:+
Coord C1 exon
chr1:157531280-157531392
Coord A exon
chr1:157532046-157532052
Coord C2 exon
chr1:157532053-157532173
Length
7 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TCTGTTTTGCTTTCTCTGAGGGT
3' ss Score
-1.25
Exon sequences
Seq C1 exon
GTCAGGCTATGGGGACCCCTATCAGAGGTACCACACTCCGACACCGAGGGATGAGTATGCTTATGGAAATTACTACTACCACGGACATCCACAGCTGCTGCCGGAAGAAAGAG
Seq A exon
GGTGCAG
Seq C2 exon
TGGCAAGGCAAGGGAGTCCTTATATCTGGCATGAAGATCATGGAGACCAGAGGTACTTCGGCGAGCATCATCGGGAGAAGCACAATGGTACATTTGGAGCAAACAGTGATACCCAGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-13-13,13-12,13-11-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCACGGACATCCACAGCT
R:
CCGAAGTACCTCTGGTCTCCA
Band lengths:
99-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types