MmuEX0041455 @ mm10
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157506810-157524853:+
Coord C1 exon
chr1:157506810-157506860
Coord A exon
chr1:157507386-157507553
Coord C2 exon
chr1:157524785-157524853
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGGAAACTTCTGTTCTCAAGCTA
3' ss Score
2.34
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ATGGGATGTCGCAGGAGCAGCTGCAGCAGCTCCTCATTTAGGAGCAAAGAT
Seq A exon
CTATACAGATGACTAGGGGCCTGGTGCCTGCCAACTGTGACAAATGAGGACTTGGCACAGAGTGGTGAGCAAGCGGTGGCTGTGTGGCTTCTGTTCCCAAGGTTTATATCCTGAAGTTGGGTCCAGAGTTCCTGCTATTTGCCGAGTTCATAAACCATGTGTTTACAG
Seq C2 exon
GGCCTCTTCCCAGGGAGATCAAAAGCATCATCGAAGCCACTGGTGAGCCAGTCCTCACGGCCTAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCGCAGGAGCAGCTG
R:
CGTGAGGACTGGCTCACCA
Band lengths:
106-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types