MmuEX7000536 @ mm10
Exon Skipping
Gene
ENSMUSG00000087093 | Gm15486
Description
predicted gene 15486 [Source:MGI Symbol;Acc:MGI:3705263]
Coordinates
chr1:157497931-157511721:-
Coord C1 exon
chr1:157511650-157511721
Coord A exon
chr1:157502182-157502258
Coord C2 exon
chr1:157497931-157498385
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTATTTTCTGTACAGGTT
3' ss Score
9.35
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AACATAAAGAGCAGCACTGACAGTTAAAGCCACCCAGCCCATCCTAGCTGCCTCACTCAGCCTCACAGAAAG
Seq A exon
GTTTATGTCATTGATCCAGCAGTGCTGTGTCATCTGTCTTTCCTATGAGAAAAGACAACATGATCTTCATGCAGAAG
Seq C2 exon
AAAGAATCATGTCACTTAATGACAAGGCTACATCCTGAAACGTGCTAGTGACCCTGAAGACACCAAAGAGCAAACACGCAAACCTACATTGTGTGAGTCAATCACTCGCTGTGGTCCCTGCCGCAATCAAGAGATGTGGTAAGCCCGAGATGTATGGCAGGAGGCTGCTGTCTGCTGTTTACAGAAAACCCTTTCCTAAGTGGAGGGAGAACATTCTAACCTAACACTAAAATATGTGTGGTGGACTGACAGGAACCAGAAGCAGTCACATGTCACCGGCCTGTATGACTAGTATGTGCTGTACTCTGTACAGCTGACATCACAGTGGACTCGTTTAAACCATCATCGCCACAAACACGTGAGCGATGTGTCGTACCATGATGATAATTCCATGTCTGCAAAGTCACTAGGCAGAAACTTTCAACTCCACTGAGGTATCACGGGACCACGATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087093-'1-2,'1-1,4-2=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCTAGCTGCCTCACTCA
R:
ACATCTCTTGATTGCGGCAGG
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types