RnoEX0001801 @ rn6
Exon Skipping
Gene
ENSRNOG00000051166 | AABR07021503.1
Description
NA
Coordinates
chr13:75158130-75164338:+
Coord C1 exon
chr13:75158130-75158241
Coord A exon
chr13:75158762-75158930
Coord C2 exon
chr13:75164193-75164338
Length
169 bp
Sequences
Splice sites
3' ss Seq
GTGGAAACTTCTGCTCTCAGGCT
3' ss Score
4.03
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GGCTGACGTGGCACGGCAGCTTGCAGTGTCTGCCAGCTGTGAGTAACAGCAGGCTGTCAGGATGGGATGTAGCAGAAGCCGCTCCAGCAGCTCCTGATTTTGGAGCAAAGAT
Seq A exon
GCTATACAGATGACTAGGGGCATGGTGCCTGCCAACGGTGACAAATGAGGACTTGGCACAGAGCAGTGAGCAAGCGGTGGCTGTGAGGCTTCTGTTCCTAAGGTTTATATCCTGAAGTTGAGTCCAGAGTTCCCGGTGTTTACAGCGTTCCTAAACCATGTGTTTACAG
Seq C2 exon
AAATCCTCTGATTGATTTGCTGTGAAGTTCTTCATTTGGTGACTAATGCAGATGTACCGGATGAGCCTGGCAAAATCTCTGACCCTTTCTGGTCTTCTCTATTGTTTCTCACATGAACAGTCCCACGGATGCCACTAGAGGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051166_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTGCCAGCTGTGAGTA
R:
TTCATCCTCTAGTGGCATCCGT
Band lengths:
234-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]