RnoINT0002187 @ rn6
Intron Retention
Gene
ENSRNOG00000051166 | AABR07021503.1
Description
NA
Coordinates
chr13:75158130-75164338:+
Coord C1 exon
chr13:75158130-75158241
Coord A exon
chr13:75158242-75164192
Coord C2 exon
chr13:75164193-75164338
Length
5951 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GGACATAAACATCGGGCTAGAAA
3' ss Score
-1.33
Exon sequences
Seq C1 exon
GGCTGACGTGGCACGGCAGCTTGCAGTGTCTGCCAGCTGTGAGTAACAGCAGGCTGTCAGGATGGGATGTAGCAGAAGCCGCTCCAGCAGCTCCTGATTTTGGAGCAAAGAT
Seq A exon
GTAAGTACTTATTTTCACCGCTAACAACTTCTCCCAAACCAAAGCCAAGCGGAAGAAAACTAAGAGGAAATGCGATTTTCACTAGAGACCCTTCTAACAGATTCAGTTGAAAAGCATTTAGCTTGAACCAGAGAAGACAGGCGTTCAGGCCAGCACATGGTTTCATCAGAACGAAGAACTTGACAGGCTCCCGTTTGAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACCAAAAACCCTCAAGTTCAATGGTGGCTAAGGCTGGTTTAGACCCTCACTCTGTACTGCATATCCTGGCAGGGACCTTCCCTTGTTGGATGGAATGCGTGGCTAATGTGCATGTAATTTCAACTTTCATAGGAATTTAGGCAAGTTTGATTATGGCGAGATGAAAGGAGTCTTGGCAATTACAGTGTTTGGGGAGAAGATGGAGCCTGTTAAATATTTTAAGGAGGATTCGAGCTGGTTAAGGCCGACTTAGAGACAGTGTGGAAACTTCTGCTCTCAGGCTATACAGATGACTAGGGGCATGGTGCCTGCCAACGGTGACAAATGAGGACTTGGCACAGAGCAGTGAGCAAGCGGTGGCTGTGAGGCTTCTGTTCCTAAGGTTTATATCCTGAAGTTGAGTCCAGAGTTCCCGGTGTTTACAGCGTTCCTAAACCATGTGTTTACAGGTTGGTGATTTTTTCCTTTCCTTTTCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCCTTTCCTTTCCTTCCTTCCTTCCCCTCCCTCCCTTCCTCCCTCTCTCCCTTCCCTCTCCCTCCTCCTCCTCCTCTTCCTCCTCCTTCTCCTCCTTCTTCCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTCTCTCTCCTCTCTCTGCTTACCAGCTTTGCAGGAAACCTCAAAAGGGACTACCTGTTGTCTACACGGAGCGTAGTTAATGTATTGGCCAACAGATATTTTTAATTCCCACCTCTCTGCTGGGAAAACCTAGGCAAACAAGGGGGAAGAAGTGGTGGCCCCTGTGGAATTTGCAGCTCAGTTGGAAAAACAGATGTTAGGAGAGGAGGAATGACCACTGGGCTGGGAGAAGAGAGATCTGGGTCCTGGCACAAGTCCTGGTGAACCATATGGCATTCTGGGCTGCGGCTTATGTGCTGCGAAGTGACTACACTGGGATAGATGAGCTCCTCAGTGACTGATTCCTCACCTAGTGTGAGTTTCTCACTTGCCGAACAGTTTCTCACACAGCTCTGGATTTTATCCACAGCTAGAAGGGTGGATATTTTCCTTATGAATGCATCTCACCCATCACCAATTAGGACACTGTGATATTCTGGAACAGTCTGGAAAGATCCTCCTAGAGGGGGCCAACTCGAAGTATGCTATTGTTAGGAACAAGCTTTGCTTTCAAGAGAAAGGCCTGAGCAGTAGTGATTCCATTACGCCTCATCTTAGATGTCGGGGTGTCGATTTTCAGGTGGCTGGTGCTTGGAATAAGAGCCTTTACTACTGATGACTTTTGAGGGACAGAGGGACAAAATGAAAATTCTTAAGATGGCCTGAACAAAATTTGACTGAGTCAAACCAAACCAAACTAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAAAACTGCCTGTGGCTTCAACTAGAATACAGAATACCTGACATTAGTGACTGTGGGGGTTTCCTGGCTTCCAGAAACTCACCACCATAGATCAACTGATTACACTGGAAATTAGGGGAAATTCATAAGACGTTTAAGTAGAAATGATAGGTGAAATACATTTCTTTAACGTAATTATTACACACATATTTTCCCCCATCAACCTTGCCTAGCCTAGCTCACAAAACTATCTACACAGGTCTGCATACATCTCTTGTTGTCTGTACTTTTGCATTTATTGTGGTTCTTCATGGGTTTTGGTTGTCTGTTGTTGTTTGAGACAAGGCCTTACATGGCTCAGGCCCGCCTGCAACTTACTGTATGATCTAGGCTGGCCTTGAACTCCTTACACTCCTACTTTAGACTCTCGAGTGCTGGGTCTATAGGTACTTGATACTACACCAAGCTAAAGTGTCCTTTTGACTCGGACAAGTCCCTCCCCAGGGACTACCATGTCCATCTCTCAGTCCTTTATTTATCTGCTCCTTCAGCCTCTCCTTTCATTGGTTTTCCATTTTGAGTTAAAAACTCACGTGCCTTCCATTTTACATCATCTCACTGATCATCAAACCAGCCAATGAAAATGCACCGCCCCTTCCCAGCATCTGCTCTCTTCTCTCCATCCCGATCTTCCCAACAACCCCATGTAATTGAGTTGATACAGTCTCAAATTTGTACAGGACTCTCTCCCTTTCTCCTTATGTTTGGTGTAGGATCTCATGTAGCCCAGGTCACTCCTGAGTTACTCTGGAGTAAGGCTCACTTACTGGCCTTCCTGCAGACCTCTCCCTCCATACTGTTCTGAACCTGTGTTCTCAGTGTAATCAACTCTTCTTTCTTCCCTTCTCACCTAAACTGTTATTTTGAAGCCTGTGTTCACCTTTGACAGTCTCATTTATAGCTGTGATTTTAATTATGACGTGGGTGTTGATACTGCCTAAATTAAAGCACACGGAATCTTCAGGGGAAACAAGGAGCACCACAAACAGATGAACATCATCCACCTCAAACTCATGTCTTCTCAGACTTCTCTTAGGAGCTCCTCCTGACTCATTTTACTGCCTCGGACTCCTCCAGCAAGCATTCCCAAAGGCAACTAAACTCCCCATGGCCCAGCATGCTTCTCCCAGTAACATTCTTGATTAGGACATCAGTATTCACAGTCACCAATCCAGGACTATATAAATCCAACCTCCAGATCCTGCTTATTCTGCCTCCTTACTCTCTCTTGAATCTGACGCCCATGCCTAGATCAATCTTCCTTTCCACCAGTCCCTTAGTTTGTCCTGATTTAAGGAGGGCATTACTGATTGACTTTGAAGCCTCACCTTGCCTGTTGTATAGAATTCTGGAACCATTCCTTCCACAAAATGTCAGAATTACTTTATTTGCCTGACCACCTAATGTTATAAAGGTATGAGAGAGAATTGTGTTTTACTTTGTAATCCTGATGCTTACAACATCATAAGGCACAAAGCCGCTACTTAATAGACTATTATCGAGTGGATGGATGGGGGAGCAGATGGCTACCTGCTCCACCCATATTGGCGTCATGCTATCCCAGCTAACCTAGTGGGAGGTGTATTTGTTTCTTCTTCAGTGGTTTCAGGATAACTTCTGTAGGTTGGAGACATCACCATCTCCAAGGTCCAGTTCAGAATGATATGTCCTTGGACATGTGCTGGATGTTGAATTAGTCTCTGTGGTTAGGGAGATATAAAATTCTTATATTTATGCTTGCATATTTGTGCCCACTCTTAGATAAAAAGATAGGCTATGTCTCATATGTGGTATATAAGTTAAGAACAGACAGGGAGGTTTTTTTTTTAAAGGAAAACTGATGAATTATTGTCAGAAATGACAGGATGTTGGGCAGGCAGAAAGAGCACATATGTTTTTTAAGTAAAGAACCCCAGGTCTTAGCTATGAGTTGGCAGCACATGCTTTTAATCCCGGCACTCAGCAGGCAAAGGCAGTTGGAGGACAGCCTTGTCTATGAAGTGGGAGTGAGTTCCTGGACAGCCAAGGCTACAAAGAGAAATGCTGTCTCAAAAACAAACAAACAAACAAAGAAACAAACAAAACACTCAAAACAAAACAACAACAAAATTAAAACACCCCAGCAAAACCAAACCCCTTAAAAATGAAAACAAAACAACAAACACAAACCAAAACCAGGTCTTAGGAGAGGTGGGGCTACCTGCCTTTCTCCAAAGCTGACTGAGGCAGCTAGGATGGGCTCAGCCGTCTTAACTGGCAGTGCTGCTCTTTATGTCCTAGGCTCTCAAACCACCAAGCCTATGAGCCACAGCACTGACCATGGCTGCTGTGTGCCCTAGACCTTCCTTTGCTCAAGAGTCTTTTTCCAGTGTGTTCCCTTCTTTTCAGAGCACACTGCTCTCTGTCACCTGCTTCCAGGATCATGCGCCCTGATCTTGCAGGTCTCAGTTGCAGCTGCTTTTCTTTTGAGAAGCTTTCTTTGACTGGGTGTGGCACCTTCATAATGGATTTCTCTTGCTTCATACTCTCATGTCCCACACAAGTCATTGTAACTAGTTTGTCTGTGTCTCCATTAGATAGATGTCTTGGCTAGTGTTATGTCAACTTGACACAAGCTACAGTCCTCAGAGGGGAGAGAGCCTCAGTACAGAAAATGCCTCTGTAAGATCCAGCTGTAAGACATTTTCTTAATTAGTGATGGATGGGGGAGGGCCCAGCCCTTTGTGGGTAGTACTGTCCCTGGGCTGGTGGTCCTGGGTTCTATAAGAAATGCTGAGTAAAGCCACGAGGAGCAAGCCAGTAAGAAGCACCCCTCACCTCCTGGGCACTGCCTCAGCTTCGGCCTCCAGGTTCCTGTCCTATTTGAGTTCCTGTCCTGACTTCTTTCAATGATGGACTATGATGTGGAAGTATAAGTCAAATAAACACTTCCTTCCCCAGACAGCTTTTGGTCATGGTGTTTTATTATAGCAACAGAACCCCTCAGACATAAGTAAACTCCAAGAGTGCAGGTAGTAAGTTTACCTTGTTCTCTGTATGTGACCTAACTTGGCATGTAATAGGCACGCATTCCCTAGTTATTAGGTAAGAACATGAACTGTGGATTCTTTCTATACAGTTTTGGGACTTACCTTCTTCACTGTAGGAGTTATGGAGAATCAGCTTCTATGGGAGAAAAATAATTTTATTTCGATTAACAAATGAAATGATATTTGTGTAAAATAATTACTTGTTGAATGAAAGAACTACTTTTTTTTTTCATTCTCCATAGATGAGTTAGACCACAGTTGGAGTCAGTTAATGATATCATGTATTTGATGAATAACATCCGGTTCAGCAGGAGGACACGATGTCTTTCATGCCACGAGGAATACAAAGTGTATCCTTAGTGTTAAAGAAAACAGTGGTAGCAATCTTGTAGAGAAACAGAAGCAATGTCAGGAAGGGTAGTGTTCGCTCAGCGCGTGGAGAATCTGCAGCAGCCATTTATAAGCTGTCCCCAGCAAACAACAAGCCTGGGCAACTGTGCTGTGATGGCTGCAGACATGCGTGCTCAGAAAATAACACTCTATCGTCTTGACACGCCCTTCGATGTCCTCGAGAACTGAAGTTTGAACTTTGTTTTCTGGCAGCGTAAGTGGTTCCTACAGAAATCGCCCTAATGTGCTAAATTCAGCACCAGAGCAGCTCTCCTGGGGAGCAGCTCTATCTGCAGGCACTAATTCCAGACCGAGAGAACAAGGGACATAAGTGCCACTGAGACACGTGTATGCATTCACCGACTATTTCTGTACATGAACGGTGGGCAGAGGAGTGGAACACCAGAGAGTGGAATGGAACTTTGTTGGCTGACAAATTGGATGAGGAGAAAATACAGAAATGAATCTTGGAGGTCTTATTTTTATCATTGAATAGCTGTCTACCTACCTACCAATCTATCATTAGGCTGAATGAGCCTATTTATACAGGCTTGATGACTTTGAAGGTTGTAATCATTGTATTCACATGAAACGAGTTTTTACATAATTGCGGTTTTTTGTGTTGAATATATTCCATGCCTATTGCTAAGCACTGTGCTTTCTTTTTTTCTTTTTCTTTTTTTGGACATAAACATCGGGCTAG
Seq C2 exon
AAATCCTCTGATTGATTTGCTGTGAAGTTCTTCATTTGGTGACTAATGCAGATGTACCGGATGAGCCTGGCAAAATCTCTGACCCTTTCTGGTCTTCTCTATTGTTTCTCACATGAACAGTCCCACGGATGCCACTAGAGGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051166:ENSRNOT00000076586:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]