HsaEX0056840 @ hg19
Exon Skipping
Gene
ENSG00000120341 | SEC16B
Description
Protein transport protein Sec16B [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7]
Coordinates
chr1:177927975-177930074:-
Coord C1 exon
chr1:177929926-177930074
Coord A exon
chr1:177929477-177929538
Coord C2 exon
chr1:177927975-177928110
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATCTGATTGTTTTATTCCAGGTT
3' ss Score
8.53
5' ss Seq
TAGGTATAG
5' ss Score
5.16
Exon sequences
Seq C1 exon
ATGTCTCCTCAGCTGGTCCCAAAGCACCCATGAAGTTCTACATCCCTCATGTTCCTGTGAGTTTCGGGCCAGGAGGTCAGCTGGTGCATGTAGGTCCCAGCTCTCCCACTGACGGGCAAGCAGCCCTTGTTGAACTGCACAGCATGGAG
Seq A exon
GTTATTCTTAATGATTCCGAAGAGCAAGAGGAGATGAGAAGTTTCTCAGGACCCTTGATTAG
Seq C2 exon
GGAAGATGTACATAAGGTGGATATTATGACGTTTTGCCAGCAGAAAGCAGCTCAGAGCTGCAAATCTGAGACACTGGGGAGCAGAGACTCAGCTCTACTGTGGCAGCTCTTGGTTCTCCTTTGTCGCCAGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341-'29-31,'29-30,30-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.386 A=0.512 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.3=68.0)
A:
PF129322=Sec16=FE(19.6=100)
C2:
PF129322=Sec16=FE(44.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAACTGCACAGCATGGA
R:
CAAGAGCTGCCACAGTAGAGC
Band lengths:
134-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)