GgaEX6043831 @ galGal4
Exon Skipping
Gene
ENSGALG00000004424 | SEC16B
Description
protein transport protein Sec16B [Source:RefSeq peptide;Acc:NP_001026440]
Coordinates
chr8:6599726-6601584:+
Coord C1 exon
chr8:6599726-6599877
Coord A exon
chr8:6600306-6600367
Coord C2 exon
chr8:6601449-6601584
Length
62 bp
Sequences
Splice sites
3' ss Seq
AATTTGCTCTTGATTTTCAGGTA
3' ss Score
9.27
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAGGGCCCTTGGAGTCAGCTGTGATGGCACCCCACAAGTTCCTGCAGCCACATGTGCCCGTCTGCTTGGGAGCTGGAGGGCAACTGGTGCTGGTGTGTCCCCACCGTCCCACTGAGGGGCAGCTCCCCCTGGTTGAGCTGCACAGCCTGGAG
Seq A exon
GTAATCCTTCAAGGCACAACAGATCAGGAGGAGCTTCAGGCCTTCCCAGGGCCTCTGGCCAG
Seq C2 exon
GGAAGATCTGCACAAAGTAGATGTGATGACATTTTGCCAGCAAAAGATAGCCTCAAGCTGTGATCTCTCAACACAGAGAGGCAGAGATTCAGCTCTTCTCTGGAAACTCCTGGTCCTCCTGTGCCGACAGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424-'13-13,'13-10,14-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.238 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.3=66.7)
A:
PF129322=Sec16=FE(19.6=100)
C2:
PF129322=Sec16=FE(44.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTTGAGCTGCACAG
R:
CAGGAGGACCAGGAGTTTCCA
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]