MmuEX6028540 @ mm10
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157535361-157564859:+
Coord C1 exon
chr1:157535361-157535512
Coord A exon
chr1:157535852-157535913
Coord C2 exon
chr1:157564761-157564859
Length
62 bp
Sequences
Splice sites
3' ss Seq
AATTTTATTTTCTACTCCAGGTT
3' ss Score
9.23
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATGACACCTCAGCGACAGTTCCAAAGGCACCTATGAGGTTCTATGTTCCCCATGTGTCTGTGAGCTTTGGGCCAGGAGGCCAGCTAGTGTGTGTCCCCCCCAACTCTCCTGCTGATGGACAAACGGCCCTCGTTGAAGTGCACAGCATGGAG
Seq A exon
GTTTTACTTAATGATTTTGAGGATCAGGAGGAGATGAGAGCTTTCCCAGGGCCCCTTATTAG
Seq C2 exon
AGCTCGGGATTCGGCTGGTTCAGCTGGTTTCGATCAAAGCCTGCCAGCAGTGTGTCCACCTCTGGAGATGAAGACTCCTCGGACAGTTCTGACTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589_MULTIEX1-3/22=2-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.576
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.3=66.7)
A:
PF129322=Sec16=FE(19.6=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTCTGTGAGCTTTGGGC
R:
GGCAGGCTTTGATCGAAACCA
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types