BtaEX6069962 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60780615-60783330:-
Coord C1 exon
chr16:60783179-60783330
Coord A exon
chr16:60782724-60782785
Coord C2 exon
chr16:60780615-60780750
Length
62 bp
Sequences
Splice sites
3' ss Seq
AACTTGAGTTTTTGTTCCAGGTT
3' ss Score
6.16
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGGACATCTCAGCAGCTGGTCCCAAGGAACCCATGAAGTTCTATGTCCCTCACATGCCTGTGAGTTTTGGGCCAGGAGGTCAGCTGGTGTGTGTGAGTCCCAGCTCTCCCAGTGATGGACAGACAGCCCTTGTTGAACTGCACAGCATGGAG
Seq A exon
GTTATTCTGAATGATTCTGAGGAACAAGAAGAGATGAGGACTTTCTCAGGACCACTGATCAG
Seq C2 exon
GGAAGATGTGCACAAGGTGGACATCATGACGTTTTGCCAGCAGAAAGCAGCACAGAGCCACAAATCTGAGACACCGGGGAGCAGAGACTCGGCTCTACTCTGGCAGCTGTTGGTTCTCCTTTGTCGGCAGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=0.524 C2=0.196
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.3=66.7)
A:
PF129322=Sec16=FE(19.6=100)
C2:
PF129322=Sec16=FE(44.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGCCCTTGTTGAACTGC
R:
CAACAGCTGCCAGAGTAGAGC
Band lengths:
144-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]