RnoEX6044925 @ rn6
Exon Skipping
Gene
ENSRNOG00000005229 | Sec16b
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:621658]
Coordinates
chr13:75184636-75187227:+
Coord C1 exon
chr13:75184636-75184787
Coord A exon
chr13:75185142-75185203
Coord C2 exon
chr13:75187092-75187227
Length
62 bp
Sequences
Splice sites
3' ss Seq
AATTTTATTTTCTACTCCAGGTT
3' ss Score
9.23
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGACACCTCAGCGACCGTTCCCAAGGCACCCATGAGGTTCTACGTTCCCCACGTGTCTGTGAGCTTTGGGCCAGGAGGCCAGCTGATATGTGTGTCCCCCAACTCTCCTGCTGATGGACAAACGGCCCTTGTTGAAGTGCACAGCATGGAG
Seq A exon
GTTATACTTAATGATTTTGAGGATCAAGAGGAGATGAGAGCTTTCCCAGGGCCCCTCATCAG
Seq C2 exon
GGAGGACATACACAAGGTGGATATCATGACATTTTGTCAGAAGAAAGCAGCTCAGTGTCTCAAATCTGAGACGCCAGGGAGCAGGGACTCAGCTCTGCTTTGGCAACTGCTGGTTCTCCTTTGTCGACAGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005229-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.3=66.7)
A:
PF129322=Sec16=FE(19.6=100)
C2:
PF129322=Sec16=FE(44.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACGGCCCTTGTTGAAGT
R:
CAAAGCAGAGCTGAGTCCCTG
Band lengths:
136-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]