MmuEX6028540 @ mm9
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:159465492-159467784:+
Coord C1 exon
chr1:159465492-159465643
Coord A exon
chr1:159465983-159466044
Coord C2 exon
chr1:159467649-159467784
Length
62 bp
Sequences
Splice sites
3' ss Seq
AATTTTATTTTCTACTCCAGGTT
3' ss Score
9.23
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATGACACCTCAGCGACAGTTCCAAAGGCACCTATGAGGTTCTATGTTCCCCATGTGTCTGTGAGCTTTGGGCCAGGAGGCCAGCTAGTGTGTGTCCCCCCCAACTCTCCTGCTGATGGACAAACGGCCCTCGTTGAAGTGCACAGCATGGAG
Seq A exon
GTTTTACTTAATGATTTTGAGGATCAGGAGGAGATGAGAGCTTTCCCAGGGCCCCTTATTAG
Seq C2 exon
GGAGGACATACACAAGGTGGATATCATGACGTTTTGTCAGCAGAAAGCAACGCAGTGTCTCAAATCTGAGACACCAGGGAGCAGAGACTCAGCTCTACTTTGGCAACTGCTGGTTCTCCTTTGTCGACAGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'14-14,'14-12,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.3=66.7)
A:
PF129322=Sec16=FE(19.6=100)
C2:
PF129322=Sec16=FE(44.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGTTGAAGTGCACAGCAT
R:
AAAGGAGAACCAGCAGTTGCC
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: