MmuEX6028526 @ mm10
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157564761-157565732:+
Coord C1 exon
chr1:157564761-157564859
Coord A exon
chr1:157565421-157565529
Coord C2 exon
chr1:157565653-157565732
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTTCTCACCAAGCAGGAG
3' ss Score
5.94
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGCTCGGGATTCGGCTGGTTCAGCTGGTTTCGATCAAAGCCTGCCAGCAGTGTGTCCACCTCTGGAGATGAAGACTCCTCGGACAGTTCTGACTCAGAG
Seq A exon
GAGTCTCCCAGAGCATCTTCTCCTCACCATGCGAGCCCAGGCCTCTCACCAACACCTCCTCTCACATCCCCATCCCTGCCAGGTGCCAGCACCTTCTCGAGAGGCACAG
Seq C2 exon
GTGGGAGTATTCTCCAAGGATCCTCAAACAGTAGTGGAATCGCTGAAGGCATGGGGATTGGAGGGTTCTCGGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'46-55,'46-54,47-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=1.000 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGGGATTCGGCTGGTT
R:
CTGTGTCCCCGAGAACCCTC
Band lengths:
178-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types