MmuEX6028526 @ mm9
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:159494892-159495863:+
Coord C1 exon
chr1:159494892-159494990
Coord A exon
chr1:159495552-159495660
Coord C2 exon
chr1:159495784-159495863
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTTCTCACCAAGCAGGAG
3' ss Score
5.94
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGCTCGGGATTCGGCTGGTTCAGCTGGTTTCGATCAAAGCCTGCCAGCAGTGTGTCCACCTCTGGAGATGAAGACTCCTCGGACAGTTCTGACTCAGAG
Seq A exon
GAGTCTCCCAGAGCATCTTCTCCTCACCATGCGAGCCCAGGCCTCTCACCAACACCTCCTCTCACATCCCCATCCCTGCCAGGTGCCAGCACCTTCTCGAGAGGCACAG
Seq C2 exon
GTGGGAGTATTCTCCAAGGATCCTCAAACAGTAGTGGAATCGCTGAAGGCATGGGGATTGGAGGGTTCTCGGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=1.000 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGGGATTCGGCTGGTT
R:
CTGTGTCCCCGAGAACCCTC
Band lengths:
178-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: