HsaINT0146721 @ hg38
Intron Retention
Gene
ENSG00000120341 | SEC16B
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr1:177937214-177939777:-
Coord C1 exon
chr1:177939702-177939777
Coord A exon
chr1:177937514-177939701
Coord C2 exon
chr1:177937214-177937513
Length
2188 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CCTTTGTTCCACGTCCTTAGAAA
3' ss Score
8.75
Exon sequences
Seq C1 exon
CAAAAGGTAGCAGGAGACATTGGGGATCCTCATCCTACTCGCTCAGATATTTCGGGAGCCGGAGGAACAACAACAG
Seq A exon
GTACCCAAAATGATGAACTGAGCATATACATAGCTGACGCTCAGGATCTGATTCTACGAGACAAAGTAATTTATGAAAGCACTCGCCCTTTGCTTCCCAGGGTGCCTGCCTTGCCTGTGTAAGTCCGCCCCGTTGTCCAGGCGCCTTCTCCACCCAGCTCCTGCCAGCCTCACACATCCCTAACACTTCTAAGTTCCCTCAGTCTGAGCTTCTGCTTCATGATTCAGGTTTTTAAATATCTGAGTGTTTTTTGTGTTGCACTGTATTGTTAGCCAATTCTTTCTCCTATGTTAATAACTTCTCTCCAGCTGGATACATTTCTTGAGTCCAGAGATTGTGGTTCATCTGTATCTTATGTGAGTGCTGGGGATGTCAGAAGTCCTTAAGAGTTTTGAGCTAGTGATTGCCAGATGATTGTGGAATAAGTATGTTTCAATGTTTTCATGGCATCTCCACTCTTCCCTTGGGATGATTCCCAATGGTGTGTTGGCAGGCACCATATCCCTGGTTAACTGTGTACCCTTTCCCCAAGTTCCCCCTGCAGTAGGGCCGGGAAAGGGCCCCCGTCTCTTCCCAGCCCTGTGTCCTTCCTCAGGCGTGAGCAAAGGGAAGGGTGGGCAGGGCAGGCCTTGGCTTCTGTTTCTCACTGTGTAGCAGGATCTGTAAAGGTGGGGGGTGGAGGAGAGCCCGGCTGGGTGCCTGTGGATTGTGCTTCCCCACAGCCCTGCCTCCTGATGCCTTGGTGCCCAGTGGAGCAGGCGGGTTGGCCACCCATGCCAGTCCTGTGACCAATCTTGTTATAGGTCCACACCTTAGTTTATGTTACCAGTCAGGTCTTTTCCAGGGCAAATGTACTCTGATTCCTTAAGAACAGAGCCATGATTTCTGTGGTCTGATTTGGGTTTTTAGCTGGAAGCTTTCTAAGTTTTAAATACCCATGTCCATCAGGAAGTCCTTAAAGAAGAAATAATTTATCAAAAAATAAAAAGGTGTGGAGTTAGATAGGATGGTAATTTCAGCCCTCCCAACCCACTGGCTAGAGGCTCAGGGATCATACAAGGCAGTGTTAACTTAAAAAAAAAGTCATACAATGTGTACATTTGGAAAGGAGACTTTATTTCTTACAAAGGGTTCCATCCTGCAAGGTGGCCATCCCGCAGGCTGGGAAGTATAGCCAGGCACTTTGAGGGAAGGAGAGGTAAGACAAGAATTTAAGTTGAATGGGTTGATCAAACATACATATTTAACAGGTTATAGGAGGAGCTGTGACTGTTCACAAAGGAGGTCCTCACACATGGATAATGAACTAATGTGCGTGTAACACATGACCCATGTTCACCTTGGGGTGGAGACTTATCCTTTAAGTGTATTACAGTTAGGCCCTATGCGTCAAAAGATCTTTTCGGGACACAGAAGCACTGAAGTGGGGAGCCTCTGTAAACTGGCCAGACCCAGTTCATGGTTGGTGGTCTTCTTATCTGGAGAAAGTTACTGATATCAGTCTTGTCCAATCAAAGCTGTGGTCATGGCTGATGGAACGGAGGCTCATTTAGTCAGCATTTGTGAATGGAATGAGTTGTAATTGTTCTAACATTGCTCATCTTGAGGCCAGTGCTTGTTGAGCTGCCAGAGAAAAAAAACCTTGTGGCCGTGAGAACGCAGTTTTTTCTTAAGGTGTAGGGGTGCGGGACTTAACCATTGCCTGGCAGGGCTTTAGGTTCTGTGTATAGTTTGGTATCTTATGGCCACCAAGAGTCTTTTCTGTTAGTCTTAAGATCTCTGTTTTAACATTAATGCTGGTCAGTTGTGTCTAAACTGCAAAAGAGAGGGGGTATAATGAGGGGTGTCTCACCTCCCATCCTGTCATGGCTGGGAACTCAGTTTTTAAGGTTTTTCTGGGGTCCCCTTGGCCAAAAGGGAGTCTGTTAAGTCAATGGAGGAGCTTAGGATTTTATTTTTAGGGTACACTAGTGAAGAAAAAAACAAACAAACAAAATTCTGTAAACAGCAATGAGGATGTTACAATCACTGTGTTTTACTTGTCATCATGTTACTGGAAGCCGCATTAGACAGCTCGTCCTTGTGACTGCTTTCCAAAGAAGACATAAGCAGGAATGTTTCTGGTGTGATCAGTATGCAAATGCCGCATTTCAGGTCTGACTTCTTTACCTTTGTTCCACGTCCTTAG
Seq C2 exon
AAAACACTTTCTACCAGGACTTTTCTGGATGTCAAGGCTACTCTGAAGCCCCTGGGTACCGCTCAGCTCTGTGGCTGACACCTGAGCAGACCTGCCTGCTCCAGCCCAGCCCACAGCAGCCCTTTCCCCTCCAGCCGGGCTCCTACCCAGCAGGAGGGGGTGCAGGGCAGACAGGGACACCGAGGCCTTTTTACTCAGTTCCTGAGACCCATCTACCAGGGACTGGCAGCAGCGTGGCAGTGACAGAGGCCACTGGAGGAACAGTCTGGGAGGAAATGCTGCAGACACACCTGGGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341:ENST00000308284:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=0.733
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=PD(2.2=23.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development