HsaEX0056845 @ hg38
Exon Skipping
Gene
ENSG00000120341 | SEC16B
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr1:177941900-177946531:-
Coord C1 exon
chr1:177946420-177946531
Coord A exon
chr1:177944561-177944666
Coord C2 exon
chr1:177941900-177942040
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTTATTCTCTGGTTTTAGTCA
3' ss Score
7.17
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTGGGAAGGGGCTTGTGGAGGCAGCTCACTTCTGCTATCTCATGGCTCACGTGCCCTTTGGCCACTACACCGTGAAGACAGACCATCTGGTCTTGCTGGGCAGCAGCCACAG
Seq A exon
TCAAGAGTTTTTGAAATTTGCAACAACTGAGGCAATCCAGAGGACGGAAATCTTCGAGTACTGTCAGATGCTGGGCCGCCCCAAATCCTTCATCCCTTCTTTCCAG
Seq C2 exon
GTGTATAAGCTCCTTTATGCTTCCCGTCTGGCAGATTATGGCCTCGTGTCCCAGGCTTTGCATTACTGCGAAGCCATTGGTGCAGCTGTCTTGAGCCAGGGAGAGAGCAGTCACCCTGTGCTATTAGTGGAACTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341-'17-23,'17-22,19-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(13.6=100)
A:
PF129312=Sec16_C=FE(12.8=100)
C2:
PF129312=Sec16_C=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAAGGGGCTTGTGGAG
R:
TCCACTAATAGCACAGGGTGACT
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development