DreEX0064775 @ danRer10
Exon Skipping
Gene
ENSDARG00000099554 | sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-274]
Coordinates
chr6:23804293-23809317:-
Coord C1 exon
chr6:23809206-23809317
Coord A exon
chr6:23809014-23809119
Coord C2 exon
chr6:23804293-23804430
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTAATCCTTTGATTGCAGTGT
3' ss Score
5.49
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CCTCCAGGGATATGCTGTTTGCTTCACACATTTGCTACCTCACGGCTCAATGTCCTTTTGGCTGGTACAGAAATAGATCAGAACGTCTGGTTCTTTTGGGTAGTAAGCAAAG
Seq A exon
TGTAATGTTTTCCAAGTTCTGTCACAACTCTGCCATTCGCTGTACTGAACTGTTTGAGTACTGCCAGCGGCTTGGAAATGCTGAGTTCGTCATTCCTGCTTTTCAG
Seq C2 exon
GTGTATAAATTCCTGTATGCATGCCGGCTGCTGGACTGTGGGCTCGTTTCTCAGGCCTTCCACTACTGTGAAGTGGTGGGGAAAGCTCTGCTTAGAATAGACCAACCCCATGTGGTGCTATTGGGAGAGCTTATAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099554-'17-21,'17-18,18-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(14.8=100)
A:
PF129312=Sec16_C=FE(14.0=100)
C2:
PF129312=Sec16_C=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGGGATATGCTGTTTGC
R:
AGCTCTCCCAATAGCACCACA
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]