RnoEX0078975 @ rn6
Exon Skipping
Gene
ENSRNOG00000005229 | Sec16b
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:621658]
Coordinates
chr13:75201596-75205385:+
Coord C1 exon
chr13:75201596-75201707
Coord A exon
chr13:75203295-75203400
Coord C2 exon
chr13:75205245-75205385
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTTATTCTCTGCTTTTAGTCA
3' ss Score
7.67
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTGGAAAAGGGCTTGTGGAGGCATCTCACTTCTGCTACCTCATGGCTCACGTGCCCTTCGGCCACTATACGGTGAAGACAGACCATCTGGCCTTGGTGGGCAGTAACCACAG
Seq A exon
TCAAGAGTTTTTGAAATTTGCAACAATTGAGGCTATCCAGCGGACGGAAATCTTCGAGTACTGCCAGATGCTGGGCCGCCCCAAATCCTTCATCCCGTCCTTCCAG
Seq C2 exon
GTGTATAAGCTCCTTTATGCTTCCCGTCTGGCAGATTACGGCCTGGCATCCCAAGCCTTGCATTACTGTGAAGCCATTGGTGCAGCTGTCCTGAGCGAGGGAGGGAGCAGTCACCCCGTGCTATTAGCGGAGCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005229-'18-25,'18-21,19-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(15.0=100)
A:
PF129312=Sec16_C=FE(14.2=100)
C2:
PF129312=Sec16_C=FE(18.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAAAGGGCTTGTGGAGG
R:
ATGAGCTCCGCTAATAGCACG
Band lengths:
249-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]