BtaEX0031731 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60761686-60765534:-
Coord C1 exon
chr16:60765423-60765534
Coord A exon
chr16:60763483-60763588
Coord C2 exon
chr16:60761686-60761826
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTTATTCTCTGGTTTTAGTCA
3' ss Score
7.17
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTGGGAAGGGGCTGGTGGAGGCTGCTCACTTCTGCTACCTCATGGCCCACGTGCCCTTCGGCTACTACACCGTGAAGACAGACTACTTGGGCCTGCTGGGCAGTAGCCACAG
Seq A exon
TCAAGAGTTTTTGAAATTTGCAACAACTGAGGCTATCCAGAGGACGGAAATCTTCGAGTACTGTCAGATGCTGGGCCGTCCCCGATCCTTCATCCCTTCTTTCCAG
Seq C2 exon
GTGTATAAGCTCCTCTATGCGTCCCGTCTGGCAGATTATGGCCTCACGTCCCAGGCCTTGCATTACTGCGAAGCCGTTGGCACAGCCCTCCTGAGCCACGGAGAGAGCAGTCACCCTGTGTTATTAGTGGAACTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-'24-23,'24-21,25-23
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(15.1=100)
A:
PF129312=Sec16_C=FE(14.3=100)
C2:
PF129312=Sec16_C=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAAGGGGCTGGTGG
R:
TCCACTAATAACACAGGGTGACT
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development