GgaEX6043827 @ galGal3
Exon Skipping
Gene
ENSGALG00000004424 | SEC16B
Description
NA
Coordinates
chr8:6932301-6933312:+
Coord C1 exon
chr8:6932301-6932412
Coord A exon
chr8:6932821-6932926
Coord C2 exon
chr8:6933172-6933312
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCTCTGCCCTGCAGCCA
3' ss Score
9.26
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CTGGCAAGGGAGCAGTGGAGGCGGCTCACTTCTGCTACCTGATGGCAGATATTCCATTTGGTTACTTTGGGGTGAAGGCAGACCGCATGGCTCTGCTGGGCAGCAGCCACCG
Seq A exon
CCAGGCATTCACCCAGTTTGCCACCACTGAGGCCATCCAGCGCATGGAAATCTTTGAGTACTGCCAGCAGCTGCGGCACCCCACATCCTTCCTGCTCCCATTCCAG
Seq C2 exon
GTGTACAAGCTCCTCTATGCCTCCCGCCTGGCTGACCATGGGCTGCCAGCCCAAGCCCTGCTCTACTGTGAGCAGATTGCTACCGTGCTCCTCCAGCAGGACCCAACCAGCCACCCTGTCCTGGCCCAGCAGCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424-'14-17,'14-15,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(15.4=100)
A:
PF129312=Sec16_C=FE(14.6=100)
C2:
PF129312=Sec16_C=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAGGGAGCAGTGGAG
R:
CTTGGTCAGCTGCTGGGC
Band lengths:
253-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]