DreEX6043086 @ danRer10
Exon Skipping
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52070162-52072170:-
Coord C1 exon
chr16:52072059-52072170
Coord A exon
chr16:52071838-52071943
Coord C2 exon
chr16:52070162-52070302
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTTGTTCCCAGCTT
3' ss Score
8.83
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CATCTAAAGGTCTTGTAGACGCAGCCCATTTCTGTTACCTGATGGCTCAGGTGGGTTTCGGTGTTTATACCAAGAAAAGCACCAAGATGGTCCTCATCAGCTCCAATCACAG
Seq A exon
CTTGCCTTTTTTGAAGTTCTGCTCATCAGAGGCAATTCAGCGGACAGAATCATACGAATACGCTCAGTCTCTTGGCTCTCAGCCTCTTTCTCTGCCTAACTTCCAG
Seq C2 exon
GTGTTCAAGTTCATCTACGCATGTCGTCTGGCGGAGTCTGGTCTCTGCGCTCAAGCTTTTCATTACTGTGAGGTCATTTCCCGCACACTGTTGAGTCTGCCGGAGTATTACTCTCCTGTGTTCATCAGTCAGCTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGTAGACGCAGCCCATT
R:
TGTATGAGCTGACTGATGAACACA
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]